miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18196 5' -59.3 NC_004680.1 + 57482 0.66 0.473483
Target:  5'- gUUCCagGCGGcCGuCGUCCACGACgaGg- -3'
miRNA:   3'- -AAGGa-CGCC-GC-GCAGGUGUUGgaCga -5'
18196 5' -59.3 NC_004680.1 + 5617 0.66 0.463568
Target:  5'- -gUCUGCGG-GCGggcaCCAUcgggAACCUGCUg -3'
miRNA:   3'- aaGGACGCCgCGCa---GGUG----UUGGACGA- -5'
18196 5' -59.3 NC_004680.1 + 59141 0.66 0.453763
Target:  5'- aUCaCgcgGCGGCGCagacacacUCgACAACCUGCg -3'
miRNA:   3'- aAG-Ga--CGCCGCGc-------AGgUGUUGGACGa -5'
18196 5' -59.3 NC_004680.1 + 33555 0.66 0.447934
Target:  5'- uUUCCUGaCGG-GCGcCCGCcguggggaacuccucGGCCUGCg -3'
miRNA:   3'- -AAGGAC-GCCgCGCaGGUG---------------UUGGACGa -5'
18196 5' -59.3 NC_004680.1 + 50600 0.67 0.425044
Target:  5'- aUCCU-CGGgGUcgGUCCACAGCC-GCUu -3'
miRNA:   3'- aAGGAcGCCgCG--CAGGUGUUGGaCGA- -5'
18196 5' -59.3 NC_004680.1 + 35637 0.67 0.425044
Target:  5'- -aCCUGCGGCGaUGUCgACGuuuGCCcaGCUa -3'
miRNA:   3'- aaGGACGCCGC-GCAGgUGU---UGGa-CGA- -5'
18196 5' -59.3 NC_004680.1 + 50038 0.67 0.415715
Target:  5'- cUUCgaGCugGGCGUG-CCAgAGCCUGCa -3'
miRNA:   3'- -AAGgaCG--CCGCGCaGGUgUUGGACGa -5'
18196 5' -59.3 NC_004680.1 + 45606 0.67 0.406512
Target:  5'- ----gGCGGCGCGUCUggcgucgcGCcuCCUGCUg -3'
miRNA:   3'- aaggaCGCCGCGCAGG--------UGuuGGACGA- -5'
18196 5' -59.3 NC_004680.1 + 39864 0.67 0.397438
Target:  5'- cUCCaUGCGGCGC-UCCAUgcggcgcucCCUGCg -3'
miRNA:   3'- aAGG-ACGCCGCGcAGGUGuu-------GGACGa -5'
18196 5' -59.3 NC_004680.1 + 39828 0.67 0.397438
Target:  5'- cUCCaUGCGGCGC-UCCAUgcggcgcucCCUGCg -3'
miRNA:   3'- aAGG-ACGCCGCGcAGGUGuu-------GGACGa -5'
18196 5' -59.3 NC_004680.1 + 39684 0.67 0.397438
Target:  5'- cUCCaUGCGGCGC-UCCAUgcggcgcucCCUGCg -3'
miRNA:   3'- aAGG-ACGCCGCGcAGGUGuu-------GGACGa -5'
18196 5' -59.3 NC_004680.1 + 4584 0.67 0.388495
Target:  5'- -aCCUgGCGGCuGCGUCCugGucgaCUGCc -3'
miRNA:   3'- aaGGA-CGCCG-CGCAGGugUug--GACGa -5'
18196 5' -59.3 NC_004680.1 + 12472 0.68 0.379685
Target:  5'- --gCUGcCGGUGCG-CCACAaaGCCUGUUc -3'
miRNA:   3'- aagGAC-GCCGCGCaGGUGU--UGGACGA- -5'
18196 5' -59.3 NC_004680.1 + 4316 0.68 0.362471
Target:  5'- cUUCCgguagucaaCGGCGCGUCCgccGCggUCUGCg -3'
miRNA:   3'- -AAGGac-------GCCGCGCAGG---UGuuGGACGa -5'
18196 5' -59.3 NC_004680.1 + 39922 0.68 0.345807
Target:  5'- -cCCUGCGGCGC-UCCguGCGGCgcucuCUGCg -3'
miRNA:   3'- aaGGACGCCGCGcAGG--UGUUG-----GACGa -5'
18196 5' -59.3 NC_004680.1 + 14514 0.69 0.314152
Target:  5'- cUCCUGCGGCGaCGgcggCACAGacgucaaauCCUGCa -3'
miRNA:   3'- aAGGACGCCGC-GCag--GUGUU---------GGACGa -5'
18196 5' -59.3 NC_004680.1 + 53744 0.69 0.306588
Target:  5'- gUCCUGCGGC-CG-CCACGAuuguuCUUGCa -3'
miRNA:   3'- aAGGACGCCGcGCaGGUGUU-----GGACGa -5'
18196 5' -59.3 NC_004680.1 + 39718 0.7 0.284738
Target:  5'- -cCCUGCGGCGC-UCCguGCGGcgcucCCUGCg -3'
miRNA:   3'- aaGGACGCCGCGcAGG--UGUU-----GGACGa -5'
18196 5' -59.3 NC_004680.1 + 26203 0.7 0.284032
Target:  5'- gUUCCUGCGGUgaagaggacggugGCGUUC-CAGCCgGCg -3'
miRNA:   3'- -AAGGACGCCG-------------CGCAGGuGUUGGaCGa -5'
18196 5' -59.3 NC_004680.1 + 39754 0.7 0.251086
Target:  5'- -cCCUGCGGCGC-UCCAUgcggcgcucCCUGCg -3'
miRNA:   3'- aaGGACGCCGCGcAGGUGuu-------GGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.