miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18197 5' -55.9 NC_004680.1 + 12586 0.66 0.70619
Target:  5'- -gGCGGUGCGCucggaauggCGgUGCagGCCGGCgGCa -3'
miRNA:   3'- ugUGCUACGCG---------GCgACG--UGGUUGaCG- -5'
18197 5' -55.9 NC_004680.1 + 7078 0.66 0.70619
Target:  5'- cCACGAgaUGCGCCuGCggaucagucGCGCCGACcuucccGCg -3'
miRNA:   3'- uGUGCU--ACGCGG-CGa--------CGUGGUUGa-----CG- -5'
18197 5' -55.9 NC_004680.1 + 17179 0.66 0.704037
Target:  5'- gACACGcgGgGCCGCcaaucgaaCGGCUGCg -3'
miRNA:   3'- -UGUGCuaCgCGGCGacgug---GUUGACG- -5'
18197 5' -55.9 NC_004680.1 + 23077 0.66 0.684545
Target:  5'- cACACug-GCGCCGCUgGCACgAcCgggGCg -3'
miRNA:   3'- -UGUGcuaCGCGGCGA-CGUGgUuGa--CG- -5'
18197 5' -55.9 NC_004680.1 + 53233 0.66 0.684545
Target:  5'- cGCACGAgguugGUGCaGCgGCAgggCAACUGCu -3'
miRNA:   3'- -UGUGCUa----CGCGgCGaCGUg--GUUGACG- -5'
18197 5' -55.9 NC_004680.1 + 29153 0.66 0.662699
Target:  5'- cCACuGcgGCGCCGCcgGaCACUGACaGCa -3'
miRNA:   3'- uGUG-CuaCGCGGCGa-C-GUGGUUGaCG- -5'
18197 5' -55.9 NC_004680.1 + 18429 0.66 0.662699
Target:  5'- gACACGGUgGUGuCCGCUauccGCGgCGGCgUGCa -3'
miRNA:   3'- -UGUGCUA-CGC-GGCGA----CGUgGUUG-ACG- -5'
18197 5' -55.9 NC_004680.1 + 55847 0.66 0.662699
Target:  5'- -gGCGA-GCGCCGCUuGgACUAGaaGCa -3'
miRNA:   3'- ugUGCUaCGCGGCGA-CgUGGUUgaCG- -5'
18197 5' -55.9 NC_004680.1 + 57767 0.66 0.651729
Target:  5'- gACACGAUGU--UGaCUGCGCCGAUggauugGCg -3'
miRNA:   3'- -UGUGCUACGcgGC-GACGUGGUUGa-----CG- -5'
18197 5' -55.9 NC_004680.1 + 9884 0.66 0.651729
Target:  5'- uCACGGc-CGCCGCgacagGCAUCAucggcguuGCUGCg -3'
miRNA:   3'- uGUGCUacGCGGCGa----CGUGGU--------UGACG- -5'
18197 5' -55.9 NC_004680.1 + 58894 0.66 0.651729
Target:  5'- uCGCGAaaaacUGCGCCGCaaugccacgcGCGCCuaaaguCUGCc -3'
miRNA:   3'- uGUGCU-----ACGCGGCGa---------CGUGGuu----GACG- -5'
18197 5' -55.9 NC_004680.1 + 707 0.67 0.64074
Target:  5'- aGCGC---GCGCUGgUGUAUCGGCUGUa -3'
miRNA:   3'- -UGUGcuaCGCGGCgACGUGGUUGACG- -5'
18197 5' -55.9 NC_004680.1 + 11918 0.67 0.64074
Target:  5'- cACGCuGUGCGCgaaguCGC-GCGgCGACUGCc -3'
miRNA:   3'- -UGUGcUACGCG-----GCGaCGUgGUUGACG- -5'
18197 5' -55.9 NC_004680.1 + 27309 0.67 0.629743
Target:  5'- aACAUGGUGggcuUGCCGCUGCGggcGCUGUu -3'
miRNA:   3'- -UGUGCUAC----GCGGCGACGUgguUGACG- -5'
18197 5' -55.9 NC_004680.1 + 37885 0.67 0.629743
Target:  5'- gGCAUGAcUGcCGCCGaggaUGCguACCGGCgUGCg -3'
miRNA:   3'- -UGUGCU-AC-GCGGCg---ACG--UGGUUG-ACG- -5'
18197 5' -55.9 NC_004680.1 + 29776 0.67 0.629743
Target:  5'- cACGCGAggaaccaucaUGuCGCUGacuagcgacCUGCGCCAGgUGCg -3'
miRNA:   3'- -UGUGCU----------AC-GCGGC---------GACGUGGUUgACG- -5'
18197 5' -55.9 NC_004680.1 + 41310 0.67 0.618749
Target:  5'- -gACGAUGcCGCUGCUGauCGCCGcCgGCa -3'
miRNA:   3'- ugUGCUAC-GCGGCGAC--GUGGUuGaCG- -5'
18197 5' -55.9 NC_004680.1 + 35398 0.67 0.618749
Target:  5'- --uCGAUGCGUCGUUGUuCUcuaugcguGACUGCa -3'
miRNA:   3'- uguGCUACGCGGCGACGuGG--------UUGACG- -5'
18197 5' -55.9 NC_004680.1 + 838 0.67 0.618749
Target:  5'- -uGCGGUGUGgaGCUGCACCcggagGCg -3'
miRNA:   3'- ugUGCUACGCggCGACGUGGuuga-CG- -5'
18197 5' -55.9 NC_004680.1 + 42189 0.67 0.61765
Target:  5'- gACACGGccggucaUGCGCCccaccuCUGCGCCcGGCgGCa -3'
miRNA:   3'- -UGUGCU-------ACGCGGc-----GACGUGG-UUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.