miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18198 3' -56.5 NC_004680.1 + 1152 0.68 0.536933
Target:  5'- cCGCACCGGuuGUuuAUGCCgaggCAUCg -3'
miRNA:   3'- cGCGUGGUCggCAcuUACGGa---GUGGg -5'
18198 3' -56.5 NC_004680.1 + 13234 0.69 0.516055
Target:  5'- gGCGguCCGGUCGggGAccGCCaggcCGCCCa -3'
miRNA:   3'- -CGCguGGUCGGCa-CUuaCGGa---GUGGG- -5'
18198 3' -56.5 NC_004680.1 + 3990 0.69 0.505739
Target:  5'- gGCGCugACCGGCaCG-GAGUGCCgcugcgaCGCUCu -3'
miRNA:   3'- -CGCG--UGGUCG-GCaCUUACGGa------GUGGG- -5'
18198 3' -56.5 NC_004680.1 + 9525 0.69 0.465419
Target:  5'- cCGuCACCAGCCGaacaGAucgGCCUCaACCUc -3'
miRNA:   3'- cGC-GUGGUCGGCa---CUua-CGGAG-UGGG- -5'
18198 3' -56.5 NC_004680.1 + 56868 0.7 0.445894
Target:  5'- cGUGCugCAGg-GUGGAggucaUGUCUCGCCCg -3'
miRNA:   3'- -CGCGugGUCggCACUU-----ACGGAGUGGG- -5'
18198 3' -56.5 NC_004680.1 + 36856 0.7 0.408266
Target:  5'- aGCGCAUCAGCagucgCGUGAcccGUGUCgcugCGCUCa -3'
miRNA:   3'- -CGCGUGGUCG-----GCACU---UACGGa---GUGGG- -5'
18198 3' -56.5 NC_004680.1 + 33563 0.71 0.371825
Target:  5'- cGgGCGCCcGCCGUGGGgaacuccucggccUGCgCUgGCCCu -3'
miRNA:   3'- -CgCGUGGuCGGCACUU-------------ACG-GAgUGGG- -5'
18198 3' -56.5 NC_004680.1 + 37234 0.71 0.364127
Target:  5'- aGCGUuCCAGCCG-GAuUGUgUgGCCCg -3'
miRNA:   3'- -CGCGuGGUCGGCaCUuACGgAgUGGG- -5'
18198 3' -56.5 NC_004680.1 + 34422 0.72 0.323403
Target:  5'- cGCGUACgGuGCCG-GAugGUGCUUCACCUu -3'
miRNA:   3'- -CGCGUGgU-CGGCaCU--UACGGAGUGGG- -5'
18198 3' -56.5 NC_004680.1 + 34561 0.73 0.279144
Target:  5'- uGCGcCGCCcauGuuGUGggUGCCgUCGCCg -3'
miRNA:   3'- -CGC-GUGGu--CggCACuuACGG-AGUGGg -5'
18198 3' -56.5 NC_004680.1 + 42111 0.73 0.272254
Target:  5'- gGCGCaugACCGGCCGUGu---CCUgACCCc -3'
miRNA:   3'- -CGCG---UGGUCGGCACuuacGGAgUGGG- -5'
18198 3' -56.5 NC_004680.1 + 9956 0.74 0.239842
Target:  5'- uCGCGgCGGCCGUGAAaGCggUACCCa -3'
miRNA:   3'- cGCGUgGUCGGCACUUaCGgaGUGGG- -5'
18198 3' -56.5 NC_004680.1 + 12654 0.75 0.216288
Target:  5'- aGCGCACCGccGCCGUccAUGCCgauCCCa -3'
miRNA:   3'- -CGCGUGGU--CGGCAcuUACGGaguGGG- -5'
18198 3' -56.5 NC_004680.1 + 32042 1.14 0.000371
Target:  5'- uGCGCACCAGCCGUGAAUGCCUCACCCg -3'
miRNA:   3'- -CGCGUGGUCGGCACUUACGGAGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.