Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18198 | 5' | -52.4 | NC_004680.1 | + | 55227 | 0.66 | 0.886812 |
|
Target: 5'- --cGGUGAGUGAG-CGuCUGGUccacGGUGGg -3' miRNA: 3'- gacUCACUCACUCaGU-GGCUA----CCACC- -5' |
|||||||
| 18198 | 5' | -52.4 | NC_004680.1 | + | 27619 | 0.66 | 0.87848 |
|
Target: 5'- gCUGGGUGAccgacguguucaaGUGGGgcacccaCACCGAUGuUGGu -3' miRNA: 3'- -GACUCACU-------------CACUCa------GUGGCUACcACC- -5' |
|||||||
| 18198 | 5' | -52.4 | NC_004680.1 | + | 34571 | 0.66 | 0.871431 |
|
Target: 5'- aUGuuGUGGGUGccGUCGCCGGggaUGGUGcGg -3' miRNA: 3'- gACu-CACUCACu-CAGUGGCU---ACCAC-C- -5' |
|||||||
| 18198 | 5' | -52.4 | NC_004680.1 | + | 47234 | 0.69 | 0.739544 |
|
Target: 5'- aUGGG-GGGUGAGUCGuacgguCCGGgcGGUGGc -3' miRNA: 3'- gACUCaCUCACUCAGU------GGCUa-CCACC- -5' |
|||||||
| 18198 | 5' | -52.4 | NC_004680.1 | + | 45654 | 0.76 | 0.348269 |
|
Target: 5'- aUGAGggGAGcagGAGUCACCGGgguuuccgucggUGGUGGa -3' miRNA: 3'- gACUCa-CUCa--CUCAGUGGCU------------ACCACC- -5' |
|||||||
| 18198 | 5' | -52.4 | NC_004680.1 | + | 32079 | 1.12 | 0.001483 |
|
Target: 5'- aCUGAGUGAGUGAGUCACCGAUGGUGGa -3' miRNA: 3'- -GACUCACUCACUCAGUGGCUACCACC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home