miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
182 3' -57.8 AC_000007.1 + 18661 0.66 0.487032
Target:  5'- --gCGGCAcggCGCaGGGaCGCGCGgcuagGGCg -3'
miRNA:   3'- gaaGCCGUa--GCG-CCC-GCGCGUa----CUGg -5'
182 3' -57.8 AC_000007.1 + 16480 0.66 0.476739
Target:  5'- --gCGGgGg-GCGGGUGCGCAcgGGCa -3'
miRNA:   3'- gaaGCCgUagCGCCCGCGCGUa-CUGg -5'
182 3' -57.8 AC_000007.1 + 15967 0.66 0.456486
Target:  5'- --gCGGCAcuaccgcgCGCccugGGGCGCGCAcaaacgcGGCCg -3'
miRNA:   3'- gaaGCCGUa-------GCG----CCCGCGCGUa------CUGG- -5'
182 3' -57.8 AC_000007.1 + 11358 0.66 0.452491
Target:  5'- --gCGGgAUCGaaaguuccacgcaGGGCGCgaguugcgGCAUGGCCu -3'
miRNA:   3'- gaaGCCgUAGCg------------CCCGCG--------CGUACUGG- -5'
182 3' -57.8 AC_000007.1 + 11528 0.67 0.427
Target:  5'- -gUCGGCGgccgccaCGUGuGcGCGCGCggGACUa -3'
miRNA:   3'- gaAGCCGUa------GCGC-C-CGCGCGuaCUGG- -5'
182 3' -57.8 AC_000007.1 + 16120 0.67 0.417425
Target:  5'- --gUGGCggCGUGGGCGUGUAguUGcgcGCCu -3'
miRNA:   3'- gaaGCCGuaGCGCCCGCGCGU--AC---UGG- -5'
182 3' -57.8 AC_000007.1 + 5465 0.67 0.407981
Target:  5'- --gCGGCGUgGCccuuGGCGCGCAgcuuGCCc -3'
miRNA:   3'- gaaGCCGUAgCGc---CCGCGCGUac--UGG- -5'
182 3' -57.8 AC_000007.1 + 12317 0.68 0.337454
Target:  5'- --cCGGCggUGCGGGCgGCGC-UGcagaGCCa -3'
miRNA:   3'- gaaGCCGuaGCGCCCG-CGCGuAC----UGG- -5'
182 3' -57.8 AC_000007.1 + 17143 0.69 0.321267
Target:  5'- --gUGGCAcCGggacUGGGCGUGCA-GACCg -3'
miRNA:   3'- gaaGCCGUaGC----GCCCGCGCGUaCUGG- -5'
182 3' -57.8 AC_000007.1 + 9495 0.7 0.283369
Target:  5'- --aCGGCGcggccguucUCGCGGGgGCGCAguuggaaGACg -3'
miRNA:   3'- gaaGCCGU---------AGCGCCCgCGCGUa------CUGg -5'
182 3' -57.8 AC_000007.1 + 27383 0.71 0.224207
Target:  5'- aUUCGGUuUCgGUGGGCGCGgAuuccguUGACCc -3'
miRNA:   3'- gAAGCCGuAG-CGCCCGCGCgU------ACUGG- -5'
182 3' -57.8 AC_000007.1 + 8513 0.71 0.212572
Target:  5'- --aCGGUAcCGCGcGGCGgGCGgugGGCCg -3'
miRNA:   3'- gaaGCCGUaGCGC-CCGCgCGUa--CUGG- -5'
182 3' -57.8 AC_000007.1 + 6286 0.74 0.144918
Target:  5'- gUUUGGUuuuuGUCGCGaucGGCGCGCuccuUGGCCg -3'
miRNA:   3'- gAAGCCG----UAGCGC---CCGCGCGu---ACUGG- -5'
182 3' -57.8 AC_000007.1 + 9012 1.12 0.000197
Target:  5'- cCUUCGGCAUCGCGGGCGCGCAUGACCa -3'
miRNA:   3'- -GAAGCCGUAGCGCCCGCGCGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.