miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18200 3' -60.6 NC_004680.1 + 9644 0.66 0.482414
Target:  5'- aACCgCCACGCGcc-CCAgCCGCCucCAu -3'
miRNA:   3'- -UGG-GGUGCGCcuaGGUgGGCGGuuGU- -5'
18200 3' -60.6 NC_004680.1 + 17011 0.66 0.482414
Target:  5'- uGCCCCGCGacuggggaCGGGUCCACauCCGuugggucccacaCCGACu -3'
miRNA:   3'- -UGGGGUGC--------GCCUAGGUG--GGC------------GGUUGu -5'
18200 3' -60.6 NC_004680.1 + 26036 0.66 0.472658
Target:  5'- aGCCUCAgCGCGGcgGUCUACgCGCUAGgGg -3'
miRNA:   3'- -UGGGGU-GCGCC--UAGGUGgGCGGUUgU- -5'
18200 3' -60.6 NC_004680.1 + 26443 0.66 0.472658
Target:  5'- cAUCCUgcucaaacuGCuCGGA-CCGCUCGCCGACAg -3'
miRNA:   3'- -UGGGG---------UGcGCCUaGGUGGGCGGUUGU- -5'
18200 3' -60.6 NC_004680.1 + 25717 0.66 0.472658
Target:  5'- gGCCCCG-GCGGAgcaggggCCAacuggaacCCCGUCAugAa -3'
miRNA:   3'- -UGGGGUgCGCCUa------GGU--------GGGCGGUugU- -5'
18200 3' -60.6 NC_004680.1 + 15679 0.66 0.472658
Target:  5'- -aUCCAUGCGGGuaUCCACaCCGUaCGACu -3'
miRNA:   3'- ugGGGUGCGCCU--AGGUG-GGCG-GUUGu -5'
18200 3' -60.6 NC_004680.1 + 47032 0.66 0.472658
Target:  5'- gGCCaagaCugGgGuGAUUCACCCGCUGAUg -3'
miRNA:   3'- -UGGg---GugCgC-CUAGGUGGGCGGUUGu -5'
18200 3' -60.6 NC_004680.1 + 20401 0.66 0.463003
Target:  5'- -gCCCAUGCGGAaauggucaUCCAa-CGUCAACGg -3'
miRNA:   3'- ugGGGUGCGCCU--------AGGUggGCGGUUGU- -5'
18200 3' -60.6 NC_004680.1 + 12370 0.66 0.463003
Target:  5'- -gCUgGCGCGGGUCCA-CUGCCGGg- -3'
miRNA:   3'- ugGGgUGCGCCUAGGUgGGCGGUUgu -5'
18200 3' -60.6 NC_004680.1 + 22392 0.66 0.453452
Target:  5'- cGCUCCGCGcCGGAcauUCCaACCUGCgggGACAg -3'
miRNA:   3'- -UGGGGUGC-GCCU---AGG-UGGGCGg--UUGU- -5'
18200 3' -60.6 NC_004680.1 + 12453 0.66 0.44401
Target:  5'- gACCCgGCaGUGGA-CC-CgCGCCAGCAc -3'
miRNA:   3'- -UGGGgUG-CGCCUaGGuGgGCGGUUGU- -5'
18200 3' -60.6 NC_004680.1 + 34388 0.66 0.434679
Target:  5'- --aCCAUGaCGGAgugaCACCCGCCAgaacGCAa -3'
miRNA:   3'- uggGGUGC-GCCUag--GUGGGCGGU----UGU- -5'
18200 3' -60.6 NC_004680.1 + 809 0.67 0.407384
Target:  5'- -gCCCACGCGGAUacaGCUCGUaCAGCc -3'
miRNA:   3'- ugGGGUGCGCCUAgg-UGGGCG-GUUGu -5'
18200 3' -60.6 NC_004680.1 + 8270 0.67 0.407384
Target:  5'- aACCCUcaGCGCGGuaaaugaACCCGCCGGa- -3'
miRNA:   3'- -UGGGG--UGCGCCuagg---UGGGCGGUUgu -5'
18200 3' -60.6 NC_004680.1 + 6089 0.67 0.407384
Target:  5'- gGCCCCG-GUGGugaaCACCCGCCcgguGACGc -3'
miRNA:   3'- -UGGGGUgCGCCuag-GUGGGCGG----UUGU- -5'
18200 3' -60.6 NC_004680.1 + 25535 0.67 0.398527
Target:  5'- gACCCCgccACGCGGc-CCACCC-CC-ACAa -3'
miRNA:   3'- -UGGGG---UGCGCCuaGGUGGGcGGuUGU- -5'
18200 3' -60.6 NC_004680.1 + 48149 0.67 0.398527
Target:  5'- cGCUCCACGUGGcguacagCC-CCCGCaauCAACAa -3'
miRNA:   3'- -UGGGGUGCGCCua-----GGuGGGCG---GUUGU- -5'
18200 3' -60.6 NC_004680.1 + 6981 0.67 0.389794
Target:  5'- -gCCCACG-GGAgaauuguucuUCCACgCGUCAACAa -3'
miRNA:   3'- ugGGGUGCgCCU----------AGGUGgGCGGUUGU- -5'
18200 3' -60.6 NC_004680.1 + 14066 0.67 0.389794
Target:  5'- uCCCCGaucaGCGGAgCCACCagcaGCgGGCGu -3'
miRNA:   3'- uGGGGUg---CGCCUaGGUGGg---CGgUUGU- -5'
18200 3' -60.6 NC_004680.1 + 26659 0.67 0.372709
Target:  5'- aGCUUCACGUGGuUCCGCCCcgaagGCCcGCu -3'
miRNA:   3'- -UGGGGUGCGCCuAGGUGGG-----CGGuUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.