miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18201 3' -56.2 NC_004680.1 + 6008 0.66 0.667935
Target:  5'- gGCGGGUguucaccaccgGGGCCaCUCgGGUGCggGCGCAGg -3'
miRNA:   3'- -CGUCCA-----------UCUGG-GGG-CUAUGa-CGCGUU- -5'
18201 3' -56.2 NC_004680.1 + 51807 0.66 0.650353
Target:  5'- uGCGGGccgcgguguucgcaaUAGccaauGCUCUCGGUGCUGCGCu- -3'
miRNA:   3'- -CGUCC---------------AUC-----UGGGGGCUAUGACGCGuu -5'
18201 3' -56.2 NC_004680.1 + 50635 0.66 0.62391
Target:  5'- cCAGGUAGGCagCCGAUcugACaGCGCAc -3'
miRNA:   3'- cGUCCAUCUGggGGCUA---UGaCGCGUu -5'
18201 3' -56.2 NC_004680.1 + 46094 0.68 0.54748
Target:  5'- aCGGGgcGGCCUUgGGUGCggGCGCAu -3'
miRNA:   3'- cGUCCauCUGGGGgCUAUGa-CGCGUu -5'
18201 3' -56.2 NC_004680.1 + 4021 0.68 0.536765
Target:  5'- uGCAGGUcGGugCCCgccagguucuCGAUACgGCGCu- -3'
miRNA:   3'- -CGUCCA-UCugGGG----------GCUAUGaCGCGuu -5'
18201 3' -56.2 NC_004680.1 + 40917 0.68 0.536765
Target:  5'- aCAGGcucgacccccgAGGCCCCCGAUugggacccggACUGgCGCGAc -3'
miRNA:   3'- cGUCCa----------UCUGGGGGCUA----------UGAC-GCGUU- -5'
18201 3' -56.2 NC_004680.1 + 32976 0.68 0.526124
Target:  5'- --cGGUucACCCUaCGGUGCUGCGCAGc -3'
miRNA:   3'- cguCCAucUGGGG-GCUAUGACGCGUU- -5'
18201 3' -56.2 NC_004680.1 + 29903 0.68 0.505089
Target:  5'- gGCAGGggAGACCUgaagaaCCGGUAC-GUGCAGu -3'
miRNA:   3'- -CGUCCa-UCUGGG------GGCUAUGaCGCGUU- -5'
18201 3' -56.2 NC_004680.1 + 18135 0.71 0.353077
Target:  5'- uGCAGGUGGugCCguacaUCGAUGgugUUGCGCAGu -3'
miRNA:   3'- -CGUCCAUCugGG-----GGCUAU---GACGCGUU- -5'
18201 3' -56.2 NC_004680.1 + 32855 1.08 0.000882
Target:  5'- cGCAGGUAGACCCCCGAUACUGCGCAAu -3'
miRNA:   3'- -CGUCCAUCUGGGGGCUAUGACGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.