miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18202 3' -58.1 NC_004680.1 + 34550 0.66 0.598721
Target:  5'- cGUCaGCAUCGCCgACUACCgcggCGgcgaacacUCCGCg -3'
miRNA:   3'- cCGG-CGUAGCGG-UGGUGGa---GU--------AGGUG- -5'
18202 3' -58.1 NC_004680.1 + 16745 0.66 0.595503
Target:  5'- cGGCCGCAacuggaggaUCGCCG-CGCCagcagUCGgaucgacaggaaucUCCACg -3'
miRNA:   3'- -CCGGCGU---------AGCGGUgGUGG-----AGU--------------AGGUG- -5'
18202 3' -58.1 NC_004680.1 + 24577 0.66 0.588005
Target:  5'- aGGUgaaGCGUCuccccguuCCACCGCUUCcgCCGCa -3'
miRNA:   3'- -CCGg--CGUAGc-------GGUGGUGGAGuaGGUG- -5'
18202 3' -58.1 NC_004680.1 + 16803 0.66 0.588005
Target:  5'- cGGaaGCGUCGUucaccgagaucaCACCGCCgucCAcuUCCACg -3'
miRNA:   3'- -CCggCGUAGCG------------GUGGUGGa--GU--AGGUG- -5'
18202 3' -58.1 NC_004680.1 + 58652 0.66 0.577325
Target:  5'- cGGCCcacGUGUCGCguCCGCCguguuUCCAUg -3'
miRNA:   3'- -CCGG---CGUAGCGguGGUGGagu--AGGUG- -5'
18202 3' -58.1 NC_004680.1 + 30561 0.66 0.577325
Target:  5'- cGCCGCGggaUCaCCACCGuuUCA-CCACc -3'
miRNA:   3'- cCGGCGU---AGcGGUGGUggAGUaGGUG- -5'
18202 3' -58.1 NC_004680.1 + 26261 0.66 0.577325
Target:  5'- cGGCgGUGUCGCCcUCACCggacUCAUCUc- -3'
miRNA:   3'- -CCGgCGUAGCGGuGGUGG----AGUAGGug -5'
18202 3' -58.1 NC_004680.1 + 20748 0.66 0.577325
Target:  5'- uGGCCGCcgAUCGggccuguuCCGCCGCCagCGUCgAUc -3'
miRNA:   3'- -CCGGCG--UAGC--------GGUGGUGGa-GUAGgUG- -5'
18202 3' -58.1 NC_004680.1 + 12470 0.66 0.577325
Target:  5'- uGGCUGCcggugCGCCACaaaGCCU-GUUCACc -3'
miRNA:   3'- -CCGGCGua---GCGGUGg--UGGAgUAGGUG- -5'
18202 3' -58.1 NC_004680.1 + 43601 0.66 0.556102
Target:  5'- uGGCgGCGUCGCaaccggugucCCACCUg--CCGCg -3'
miRNA:   3'- -CCGgCGUAGCGgu--------GGUGGAguaGGUG- -5'
18202 3' -58.1 NC_004680.1 + 15039 0.66 0.555046
Target:  5'- cGGCCGgAUCGUCcucaaagggaacaGCCcUCUCAUCCc- -3'
miRNA:   3'- -CCGGCgUAGCGG-------------UGGuGGAGUAGGug -5'
18202 3' -58.1 NC_004680.1 + 30124 0.66 0.545573
Target:  5'- aGGuuGUGgacgCGCCGCaggaACCguuugCGUCCACc -3'
miRNA:   3'- -CCggCGUa---GCGGUGg---UGGa----GUAGGUG- -5'
18202 3' -58.1 NC_004680.1 + 12317 0.66 0.545573
Target:  5'- gGGCgGgGgCGaCCGCCGCUUCGggugCCGCg -3'
miRNA:   3'- -CCGgCgUaGC-GGUGGUGGAGUa---GGUG- -5'
18202 3' -58.1 NC_004680.1 + 55024 0.66 0.545573
Target:  5'- cGG-CGCAUgGCuCGCCGCCUgAUCUc- -3'
miRNA:   3'- -CCgGCGUAgCG-GUGGUGGAgUAGGug -5'
18202 3' -58.1 NC_004680.1 + 35941 0.66 0.543475
Target:  5'- gGGgCGCAucacccgaacugcUCGCCGCCAUCgaaaaguUCuUCCACc -3'
miRNA:   3'- -CCgGCGU-------------AGCGGUGGUGG-------AGuAGGUG- -5'
18202 3' -58.1 NC_004680.1 + 31043 0.67 0.524718
Target:  5'- gGGCCGCccCGCUugCACaaCUC-UCCAg -3'
miRNA:   3'- -CCGGCGuaGCGGugGUG--GAGuAGGUg -5'
18202 3' -58.1 NC_004680.1 + 35761 0.67 0.524718
Target:  5'- ---aGCGUCGCCgACCGCCcgcUCAggacUCCACc -3'
miRNA:   3'- ccggCGUAGCGG-UGGUGG---AGU----AGGUG- -5'
18202 3' -58.1 NC_004680.1 + 47917 0.67 0.514404
Target:  5'- cGCCGCAgccaGCCGgCGCUcCAacUCCGCg -3'
miRNA:   3'- cCGGCGUag--CGGUgGUGGaGU--AGGUG- -5'
18202 3' -58.1 NC_004680.1 + 25673 0.67 0.514404
Target:  5'- -aCgGCAcCGgCACCgGCCUCAUCUACa -3'
miRNA:   3'- ccGgCGUaGCgGUGG-UGGAGUAGGUG- -5'
18202 3' -58.1 NC_004680.1 + 11189 0.67 0.508255
Target:  5'- cGGCCGCGgcguUCugcuugggcgccgggGCCGCCACCaaggCCGCc -3'
miRNA:   3'- -CCGGCGU----AG---------------CGGUGGUGGaguaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.