miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18206 3' -60.7 NC_004680.1 + 13957 0.66 0.50545
Target:  5'- cGCaGACaguaauguucaaCGCCCGCUgcUGGuGGCUCCGCUg -3'
miRNA:   3'- -CGgCUG------------GCGGGCGA--GUC-CUGAGGUGG- -5'
18206 3' -60.7 NC_004680.1 + 50592 0.66 0.495599
Target:  5'- gGUCGGuCCacagCCGCuUCAGGGCUUCGCUg -3'
miRNA:   3'- -CGGCU-GGcg--GGCG-AGUCCUGAGGUGG- -5'
18206 3' -60.7 NC_004680.1 + 40891 0.66 0.495599
Target:  5'- aCC-ACCGCCCGCggCGuGGACUacUCACa -3'
miRNA:   3'- cGGcUGGCGGGCGa-GU-CCUGA--GGUGg -5'
18206 3' -60.7 NC_004680.1 + 42178 0.66 0.485836
Target:  5'- uUgGACCGCCaCGCagaUCGccgaacagcuGGGCUgCCACCa -3'
miRNA:   3'- cGgCUGGCGG-GCG---AGU----------CCUGA-GGUGG- -5'
18206 3' -60.7 NC_004680.1 + 21426 0.66 0.485836
Target:  5'- gGCCGACggggcugaGCCCGCgCGGucCcacgCCACCa -3'
miRNA:   3'- -CGGCUGg-------CGGGCGaGUCcuGa---GGUGG- -5'
18206 3' -60.7 NC_004680.1 + 33562 0.66 0.485836
Target:  5'- -aCGGgCGCCCGCcgUgGGGAaCUCCucgGCCu -3'
miRNA:   3'- cgGCUgGCGGGCG--AgUCCU-GAGG---UGG- -5'
18206 3' -60.7 NC_004680.1 + 42651 0.66 0.485836
Target:  5'- gGCgGcCCGCCUGCUCGacGACggCGCCu -3'
miRNA:   3'- -CGgCuGGCGGGCGAGUc-CUGagGUGG- -5'
18206 3' -60.7 NC_004680.1 + 33961 0.66 0.476166
Target:  5'- aGCCGAUCGaucCCCGUUC-GGACUaCgACg -3'
miRNA:   3'- -CGGCUGGC---GGGCGAGuCCUGA-GgUGg -5'
18206 3' -60.7 NC_004680.1 + 28335 0.66 0.476166
Target:  5'- cGCgGGCggUGUCgGCgUCGGGGCcgaUCCACCa -3'
miRNA:   3'- -CGgCUG--GCGGgCG-AGUCCUG---AGGUGG- -5'
18206 3' -60.7 NC_004680.1 + 43622 0.66 0.470409
Target:  5'- cCCGGCCGCCCuggucgaacguggcgGCgucgCAaccGGugUcCCACCu -3'
miRNA:   3'- cGGCUGGCGGG---------------CGa---GU---CCugA-GGUGG- -5'
18206 3' -60.7 NC_004680.1 + 24850 0.66 0.466592
Target:  5'- cGCCG-CUGCCCGgagaUCccgagguGGAUgugCCACCa -3'
miRNA:   3'- -CGGCuGGCGGGCg---AGu------CCUGa--GGUGG- -5'
18206 3' -60.7 NC_004680.1 + 7430 0.66 0.466592
Target:  5'- cGCCGACCGguaucUCCGUcagCGGGuuaacgacgaGCUCCAgCa -3'
miRNA:   3'- -CGGCUGGC-----GGGCGa--GUCC----------UGAGGUgG- -5'
18206 3' -60.7 NC_004680.1 + 55373 0.66 0.46564
Target:  5'- cGCCGGCCaCuUCGCUgaagaagCAGGGCUgCCGCa -3'
miRNA:   3'- -CGGCUGGcG-GGCGA-------GUCCUGA-GGUGg -5'
18206 3' -60.7 NC_004680.1 + 25138 0.66 0.457118
Target:  5'- cCCGACCGgccccaCCGCcacCGGGAC-CUGCCu -3'
miRNA:   3'- cGGCUGGCg-----GGCGa--GUCCUGaGGUGG- -5'
18206 3' -60.7 NC_004680.1 + 55076 0.67 0.429336
Target:  5'- cCUGGCCGCCCGacguuUCAuuccGAC-CCGCCa -3'
miRNA:   3'- cGGCUGGCGGGCg----AGUc---CUGaGGUGG- -5'
18206 3' -60.7 NC_004680.1 + 32311 0.67 0.420298
Target:  5'- -gCGACCGCUgcgGCUCAGGgACaaCACCc -3'
miRNA:   3'- cgGCUGGCGGg--CGAGUCC-UGagGUGG- -5'
18206 3' -60.7 NC_004680.1 + 11784 0.67 0.420298
Target:  5'- gGCCGAacaCGCCCuGCgcgccaAGGACacCCAUCa -3'
miRNA:   3'- -CGGCUg--GCGGG-CGag----UCCUGa-GGUGG- -5'
18206 3' -60.7 NC_004680.1 + 10915 0.67 0.411376
Target:  5'- aGCCcgacggcgagGACCGCCUGUUCcccgguuGGGUUCCGCUa -3'
miRNA:   3'- -CGG----------CUGGCGGGCGAGu------CCUGAGGUGG- -5'
18206 3' -60.7 NC_004680.1 + 36530 0.67 0.411376
Target:  5'- gGCCGGCUGaacuCCGCUugcCGGGuCUUgACCg -3'
miRNA:   3'- -CGGCUGGCg---GGCGA---GUCCuGAGgUGG- -5'
18206 3' -60.7 NC_004680.1 + 3522 0.67 0.40608
Target:  5'- cGCCGGCCGCCUuaGC-CAGaGAugcugcggaauacuuCUCCcCCa -3'
miRNA:   3'- -CGGCUGGCGGG--CGaGUC-CU---------------GAGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.