miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18206 5' -54.8 NC_004680.1 + 59202 0.66 0.768997
Target:  5'- -gAUCGGGGUuguauGUggucgGCGUGgAGUUcGCCg -3'
miRNA:   3'- gaUAGCCUCG-----CGa----CGCACgUCAA-CGG- -5'
18206 5' -54.8 NC_004680.1 + 45233 0.66 0.748403
Target:  5'- ---aCGGGGCcuGCgaugGUGUGCAGUaGCg -3'
miRNA:   3'- gauaGCCUCG--CGa---CGCACGUCAaCGg -5'
18206 5' -54.8 NC_004680.1 + 41669 0.66 0.748403
Target:  5'- -gGUUGGugaGGUGCUGCGgGCAGUacaccgauucUGCg -3'
miRNA:   3'- gaUAGCC---UCGCGACGCaCGUCA----------ACGg -5'
18206 5' -54.8 NC_004680.1 + 38202 0.66 0.737922
Target:  5'- -aGUUGGAgGCGUUGCGUGaAGaaaacGCCa -3'
miRNA:   3'- gaUAGCCU-CGCGACGCACgUCaa---CGG- -5'
18206 5' -54.8 NC_004680.1 + 9816 0.67 0.693953
Target:  5'- cCUGUCuGGguaugagGGUGCUGCGUcgaaggcuggcGCGGUggcugGCCg -3'
miRNA:   3'- -GAUAG-CC-------UCGCGACGCA-----------CGUCAa----CGG- -5'
18206 5' -54.8 NC_004680.1 + 496 0.69 0.541615
Target:  5'- -aGUCGGAG-GCUGCGccGguG-UGCCc -3'
miRNA:   3'- gaUAGCCUCgCGACGCa-CguCaACGG- -5'
18206 5' -54.8 NC_004680.1 + 17562 0.71 0.468574
Target:  5'- ---gCGuGGGUGgUGCGUGCuGUUGCUg -3'
miRNA:   3'- gauaGC-CUCGCgACGCACGuCAACGG- -5'
18206 5' -54.8 NC_004680.1 + 40236 0.71 0.448629
Target:  5'- -cAUgGGGGCGUUGCGggugacggGCAGgucgGCCc -3'
miRNA:   3'- gaUAgCCUCGCGACGCa-------CGUCaa--CGG- -5'
18206 5' -54.8 NC_004680.1 + 3090 0.72 0.400921
Target:  5'- ----gGGAGCGUUGUG-GgAGUUGCCc -3'
miRNA:   3'- gauagCCUCGCGACGCaCgUCAACGG- -5'
18206 5' -54.8 NC_004680.1 + 47834 0.75 0.258036
Target:  5'- -aGUUGGAGCGCcggcuggcUGCG-GCGGUUGgCCg -3'
miRNA:   3'- gaUAGCCUCGCG--------ACGCaCGUCAAC-GG- -5'
18206 5' -54.8 NC_004680.1 + 37193 0.76 0.22062
Target:  5'- -cGUCGGuGCccaugauCUGUGUGUAGUUGCCg -3'
miRNA:   3'- gaUAGCCuCGc------GACGCACGUCAACGG- -5'
18206 5' -54.8 NC_004680.1 + 35800 1.13 0.000615
Target:  5'- cCUAUCGGAGCGCUGCGUGCAGUUGCCg -3'
miRNA:   3'- -GAUAGCCUCGCGACGCACGUCAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.