miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18207 3' -54.4 NC_004680.1 + 30668 0.66 0.823251
Target:  5'- uGGGACgcgcUCaaaacguggguGCGACUGUgagGCCGGCc -3'
miRNA:   3'- cCCCUGau--AG-----------UGCUGGCGua-UGGCCG- -5'
18207 3' -54.4 NC_004680.1 + 12350 0.66 0.823251
Target:  5'- cGGGGAgUccCGCGuCUG-GUGCUGGCg -3'
miRNA:   3'- -CCCCUgAuaGUGCuGGCgUAUGGCCG- -5'
18207 3' -54.4 NC_004680.1 + 59162 0.66 0.823251
Target:  5'- uGGGuuguGCU-UgGCGGCCGCAUugUuGGCa -3'
miRNA:   3'- cCCC----UGAuAgUGCUGGCGUAugG-CCG- -5'
18207 3' -54.4 NC_004680.1 + 50502 0.66 0.823251
Target:  5'- aGGGGugUAga---GCCGCGgGCCGGa -3'
miRNA:   3'- -CCCCugAUagugcUGGCGUaUGGCCg -5'
18207 3' -54.4 NC_004680.1 + 43623 0.66 0.814101
Target:  5'- cGGGuGAUUAcCGCGAgggacgaCGCGaaaGCCGGCg -3'
miRNA:   3'- -CCC-CUGAUaGUGCUg------GCGUa--UGGCCG- -5'
18207 3' -54.4 NC_004680.1 + 26772 0.66 0.814101
Target:  5'- cGGGcGACcuguUCGCGGgUGCGUAgCGGg -3'
miRNA:   3'- -CCC-CUGau--AGUGCUgGCGUAUgGCCg -5'
18207 3' -54.4 NC_004680.1 + 17280 0.66 0.814101
Target:  5'- uGGGuuuGAUcgUGUgGCGGCCgGUAcACCGGCg -3'
miRNA:   3'- -CCC---CUG--AUAgUGCUGG-CGUaUGGCCG- -5'
18207 3' -54.4 NC_004680.1 + 11782 0.66 0.804765
Target:  5'- -cGGugUGUcCAUGACCGCucuccCCGGg -3'
miRNA:   3'- ccCCugAUA-GUGCUGGCGuau--GGCCg -5'
18207 3' -54.4 NC_004680.1 + 6436 0.66 0.804765
Target:  5'- --cGGCUAUgACGuuuccaACCGCGUACaCGGUg -3'
miRNA:   3'- cccCUGAUAgUGC------UGGCGUAUG-GCCG- -5'
18207 3' -54.4 NC_004680.1 + 8766 0.66 0.795252
Target:  5'- -aGGAC---CGCGACgGCAacgagaugguccUGCCGGCg -3'
miRNA:   3'- ccCCUGauaGUGCUGgCGU------------AUGGCCG- -5'
18207 3' -54.4 NC_004680.1 + 14700 0.66 0.795252
Target:  5'- cGGGGACUccGUUGCG-CCGC-UACCc-- -3'
miRNA:   3'- -CCCCUGA--UAGUGCuGGCGuAUGGccg -5'
18207 3' -54.4 NC_004680.1 + 58429 0.66 0.785573
Target:  5'- uGGauGGCUGUgC-CGACUGCGUggaguaggcGCCGGCa -3'
miRNA:   3'- cCC--CUGAUA-GuGCUGGCGUA---------UGGCCG- -5'
18207 3' -54.4 NC_004680.1 + 18967 0.67 0.765759
Target:  5'- -uGGGCUuuuggguggCACGGCCGC--GCCGGg -3'
miRNA:   3'- ccCCUGAua-------GUGCUGGCGuaUGGCCg -5'
18207 3' -54.4 NC_004680.1 + 23521 0.67 0.755645
Target:  5'- cGGGcGGCcugCACGAUCaGCGUGCCGuCa -3'
miRNA:   3'- -CCC-CUGauaGUGCUGG-CGUAUGGCcG- -5'
18207 3' -54.4 NC_004680.1 + 11119 0.67 0.745408
Target:  5'- cGGGaGAC-AUCGacggGGCCGgGggGCCGGCu -3'
miRNA:   3'- -CCC-CUGaUAGUg---CUGGCgUa-UGGCCG- -5'
18207 3' -54.4 NC_004680.1 + 1477 0.67 0.745408
Target:  5'- -aGGACU---ACGACCGU--ACCGGUa -3'
miRNA:   3'- ccCCUGAuagUGCUGGCGuaUGGCCG- -5'
18207 3' -54.4 NC_004680.1 + 9872 0.67 0.745408
Target:  5'- uGGGuaccGCUuUCACGGCCGCcgcgACaGGCa -3'
miRNA:   3'- cCCC----UGAuAGUGCUGGCGua--UGgCCG- -5'
18207 3' -54.4 NC_004680.1 + 23306 0.67 0.745408
Target:  5'- cGGGGGCgagcaucucgGUgACG-CCGCGaaUugUGGCg -3'
miRNA:   3'- -CCCCUGa---------UAgUGCuGGCGU--AugGCCG- -5'
18207 3' -54.4 NC_004680.1 + 14121 0.68 0.72356
Target:  5'- -cGGACUAUCGgGGCaucggguuugguaUGCAgGCCGGUg -3'
miRNA:   3'- ccCCUGAUAGUgCUG-------------GCGUaUGGCCG- -5'
18207 3' -54.4 NC_004680.1 + 27678 0.68 0.72356
Target:  5'- uGGGACUAcuUCAcCGAaCGCGUcaaccauugggcgGCUGGCg -3'
miRNA:   3'- cCCCUGAU--AGU-GCUgGCGUA-------------UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.