miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18207 5' -46.7 NC_004680.1 + 51108 0.66 0.996369
Target:  5'- -aGCGCGUcaagUUC-CCGCAcGGAAcggauuucGACCg -3'
miRNA:   3'- cgCGCGCA----AAGcGGCGUaUUUU--------UUGG- -5'
18207 5' -46.7 NC_004680.1 + 59262 0.66 0.996369
Target:  5'- gGCGCGUGgcaCGCCuuGCA-GAGGGugCg -3'
miRNA:   3'- -CGCGCGCaaaGCGG--CGUaUUUUUugG- -5'
18207 5' -46.7 NC_004680.1 + 42719 0.66 0.996305
Target:  5'- --cCGCGUUgCGCCGCAaguuccccggucgUGGcuGGGACCg -3'
miRNA:   3'- cgcGCGCAAaGCGGCGU-------------AUU--UUUUGG- -5'
18207 5' -46.7 NC_004680.1 + 6059 0.66 0.995681
Target:  5'- gGCGCGUGUggcUGCCugGCGUGGugGAUg -3'
miRNA:   3'- -CGCGCGCAaa-GCGG--CGUAUUuuUUGg -5'
18207 5' -46.7 NC_004680.1 + 49454 0.66 0.995681
Target:  5'- aGCGCGCGaaa-GCaGCAcUGGAAGGCg -3'
miRNA:   3'- -CGCGCGCaaagCGgCGU-AUUUUUUGg -5'
18207 5' -46.7 NC_004680.1 + 21648 0.66 0.994889
Target:  5'- uGUGCGCGg--UGCCGUu------GCCg -3'
miRNA:   3'- -CGCGCGCaaaGCGGCGuauuuuuUGG- -5'
18207 5' -46.7 NC_004680.1 + 8390 0.66 0.994889
Target:  5'- cCGC-CGggUCggGCCGCAUGAAGuACUc -3'
miRNA:   3'- cGCGcGCaaAG--CGGCGUAUUUUuUGG- -5'
18207 5' -46.7 NC_004680.1 + 4114 0.66 0.994889
Target:  5'- aGCGCGCaGUUcUCGuuGCcgGucAAGACg -3'
miRNA:   3'- -CGCGCG-CAA-AGCggCGuaUu-UUUUGg -5'
18207 5' -46.7 NC_004680.1 + 50084 0.66 0.993984
Target:  5'- aCGCGgGUUUC-CCGCcUGAGuccuCCg -3'
miRNA:   3'- cGCGCgCAAAGcGGCGuAUUUuuu-GG- -5'
18207 5' -46.7 NC_004680.1 + 32422 0.66 0.993984
Target:  5'- gGCGCGCaggUUGCCGUucuuGUAGAcguuGAGCa -3'
miRNA:   3'- -CGCGCGcaaAGCGGCG----UAUUU----UUUGg -5'
18207 5' -46.7 NC_004680.1 + 43496 0.66 0.993984
Target:  5'- cGUGgGacaaGUUUCGCgGCAggUGGGAcACCg -3'
miRNA:   3'- -CGCgCg---CAAAGCGgCGU--AUUUUuUGG- -5'
18207 5' -46.7 NC_004680.1 + 58986 0.67 0.991788
Target:  5'- gGCGCGCGUggcauugCGgCGCAguuuuucgcGAAugCg -3'
miRNA:   3'- -CGCGCGCAaa-----GCgGCGUauu------UUUugG- -5'
18207 5' -46.7 NC_004680.1 + 42764 0.67 0.991788
Target:  5'- aGUGCGCugaauggcgaGUgaUCGcCCGCAUGGAaaGAGCUa -3'
miRNA:   3'- -CGCGCG----------CAa-AGC-GGCGUAUUU--UUUGG- -5'
18207 5' -46.7 NC_004680.1 + 9573 0.67 0.990473
Target:  5'- gGCGCGUGgcggUUCGgCUGCu-----GGCCg -3'
miRNA:   3'- -CGCGCGCa---AAGC-GGCGuauuuuUUGG- -5'
18207 5' -46.7 NC_004680.1 + 14434 0.67 0.990473
Target:  5'- uGUGcCGCcg-UCGCCGCA---GGAGCUg -3'
miRNA:   3'- -CGC-GCGcaaAGCGGCGUauuUUUUGG- -5'
18207 5' -46.7 NC_004680.1 + 25863 0.67 0.990192
Target:  5'- uUGCGUGUUUUGCCGUcuucuguGACg -3'
miRNA:   3'- cGCGCGCAAAGCGGCGuauuuu-UUGg -5'
18207 5' -46.7 NC_004680.1 + 27505 0.67 0.989
Target:  5'- aCGCGaucgacgUCGCCGCAUAucuGGCg -3'
miRNA:   3'- cGCGCgcaa---AGCGGCGUAUuuuUUGg -5'
18207 5' -46.7 NC_004680.1 + 36965 0.67 0.989
Target:  5'- gGUGaUGCGUUUC-CaCGCGUAGuccuGACCa -3'
miRNA:   3'- -CGC-GCGCAAAGcG-GCGUAUUuu--UUGG- -5'
18207 5' -46.7 NC_004680.1 + 57424 0.67 0.989
Target:  5'- gGUGaCGCGUUUCagguucgccgGCCGgCGUGGAuccuuACCg -3'
miRNA:   3'- -CGC-GCGCAAAG----------CGGC-GUAUUUuu---UGG- -5'
18207 5' -46.7 NC_004680.1 + 29188 0.67 0.988685
Target:  5'- gGUGCGCGaagcaauggaUGCCGCGUAcc-AGCCc -3'
miRNA:   3'- -CGCGCGCaaa-------GCGGCGUAUuuuUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.