miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18208 5' -56.9 NC_004680.1 + 3397 0.66 0.701095
Target:  5'- -gAGUCGCCugaccgugUGACGCUGGGggagaaguauucCGCAg -3'
miRNA:   3'- ggUCAGCGGuaa-----GCUGCGGCCU------------GCGU- -5'
18208 5' -56.9 NC_004680.1 + 33300 0.66 0.690559
Target:  5'- cCCGGUaGUCGUUgagGACGCCGGG-GCGg -3'
miRNA:   3'- -GGUCAgCGGUAAg--CUGCGGCCUgCGU- -5'
18208 5' -56.9 NC_004680.1 + 2861 0.66 0.679971
Target:  5'- aCCGGuUCGCCGc----CGCCGGugGUg -3'
miRNA:   3'- -GGUC-AGCGGUaagcuGCGGCCugCGu -5'
18208 5' -56.9 NC_004680.1 + 13948 0.66 0.658675
Target:  5'- cCCAGUCGCCGUUgcUGuCGC-GGcccauGCGCGc -3'
miRNA:   3'- -GGUCAGCGGUAA--GCuGCGgCC-----UGCGU- -5'
18208 5' -56.9 NC_004680.1 + 43525 0.66 0.657606
Target:  5'- aCCGGUUGCgacgccgccaCGUUCGACcagggcgGCCGGgaACGCu -3'
miRNA:   3'- -GGUCAGCG----------GUAAGCUG-------CGGCC--UGCGu -5'
18208 5' -56.9 NC_004680.1 + 56420 0.67 0.641566
Target:  5'- aCCucGUCGUCGUcgUCGACGaagaugguguaacgcCCGGAUGCc -3'
miRNA:   3'- -GGu-CAGCGGUA--AGCUGC---------------GGCCUGCGu -5'
18208 5' -56.9 NC_004680.1 + 4424 0.67 0.637285
Target:  5'- uCCAGacCGCCGagggggUCaGCGCUGGAUGCu -3'
miRNA:   3'- -GGUCa-GCGGUa-----AGcUGCGGCCUGCGu -5'
18208 5' -56.9 NC_004680.1 + 2788 0.68 0.583886
Target:  5'- gCAGUCGUCGUccCGGCGCaggcugGuGACGCGa -3'
miRNA:   3'- gGUCAGCGGUAa-GCUGCGg-----C-CUGCGU- -5'
18208 5' -56.9 NC_004680.1 + 52012 0.7 0.46116
Target:  5'- -uGGUCGCCGaagUUGAgCGucuCCGGGCGCAg -3'
miRNA:   3'- ggUCAGCGGUa--AGCU-GC---GGCCUGCGU- -5'
18208 5' -56.9 NC_004680.1 + 37989 0.7 0.451518
Target:  5'- aCAGUC-UCAggCGcACGCCGGuACGCAu -3'
miRNA:   3'- gGUCAGcGGUaaGC-UGCGGCC-UGCGU- -5'
18208 5' -56.9 NC_004680.1 + 29004 0.7 0.423272
Target:  5'- aCCGcGaUCGCCAcacUCGGCG-CGGGCGCGg -3'
miRNA:   3'- -GGU-C-AGCGGUa--AGCUGCgGCCUGCGU- -5'
18208 5' -56.9 NC_004680.1 + 22129 0.71 0.405041
Target:  5'- --uGUCGCUGUUccCGACGCCGcGCGCGc -3'
miRNA:   3'- gguCAGCGGUAA--GCUGCGGCcUGCGU- -5'
18208 5' -56.9 NC_004680.1 + 16939 0.71 0.405041
Target:  5'- cCCAGUCGCgGggcaGGUGCCGGugGUg -3'
miRNA:   3'- -GGUCAGCGgUaag-CUGCGGCCugCGu -5'
18208 5' -56.9 NC_004680.1 + 12613 0.71 0.396113
Target:  5'- gCCGG-CGgCA--UGGCGCUGGACGCGa -3'
miRNA:   3'- -GGUCaGCgGUaaGCUGCGGCCUGCGU- -5'
18208 5' -56.9 NC_004680.1 + 49647 0.72 0.361697
Target:  5'- gCUGGUCGCCGaggUUGAgCGucuCCGGGCGCAg -3'
miRNA:   3'- -GGUCAGCGGUa--AGCU-GC---GGCCUGCGU- -5'
18208 5' -56.9 NC_004680.1 + 7768 0.75 0.221855
Target:  5'- -uGGUCGCCGUUCG-CGCaGGACgGCAa -3'
miRNA:   3'- ggUCAGCGGUAAGCuGCGgCCUG-CGU- -5'
18208 5' -56.9 NC_004680.1 + 36132 1.1 0.000722
Target:  5'- aCCAGUCGCCAUUCGACGCCGGACGCAu -3'
miRNA:   3'- -GGUCAGCGGUAAGCUGCGGCCUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.