miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18209 3' -56.9 NC_004680.1 + 12914 0.66 0.677281
Target:  5'- aAGCCuGGCCAgccaggUUCGGcaacgcgggaGCcgCACCAgCCa -3'
miRNA:   3'- -UCGG-CCGGUa-----AGGCC----------UGuaGUGGU-GG- -5'
18209 3' -56.9 NC_004680.1 + 8825 0.66 0.677281
Target:  5'- gGGCC-GCCGUauuUCaaGGACGguaagcgugugUCGCCGCCg -3'
miRNA:   3'- -UCGGcCGGUA---AGg-CCUGU-----------AGUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 11189 0.66 0.666543
Target:  5'- cGGCCGcGgCGUUCUgcuuGGGCGccggggcCGCCACCa -3'
miRNA:   3'- -UCGGC-CgGUAAGG----CCUGUa------GUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 5612 0.66 0.655773
Target:  5'- uGCUGGUC--UgCGGGCGggCACCAUCg -3'
miRNA:   3'- uCGGCCGGuaAgGCCUGUa-GUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 7313 0.66 0.654695
Target:  5'- cAGCCGaaucgcuGCCcucUUCgGGaACAUCACgACCa -3'
miRNA:   3'- -UCGGC-------CGGu--AAGgCC-UGUAGUGgUGG- -5'
18209 3' -56.9 NC_004680.1 + 40211 0.66 0.644983
Target:  5'- aGGUCGGCCcaguuugUuuGGugGUUgucCCACCa -3'
miRNA:   3'- -UCGGCCGGua-----AggCCugUAGu--GGUGG- -5'
18209 3' -56.9 NC_004680.1 + 57406 0.66 0.644983
Target:  5'- cGCCGGCCGgcgUGGAUccUUACCGCg -3'
miRNA:   3'- uCGGCCGGUaagGCCUGu-AGUGGUGg -5'
18209 3' -56.9 NC_004680.1 + 38924 0.66 0.644983
Target:  5'- gAGuuGGgggaGUUCCuGGACAcCGCCACUg -3'
miRNA:   3'- -UCggCCgg--UAAGG-CCUGUaGUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 10746 0.66 0.634182
Target:  5'- uGGCUGGCCAcgucgCUGGgugGCAUCAacacgaugcUCGCCa -3'
miRNA:   3'- -UCGGCCGGUaa---GGCC---UGUAGU---------GGUGG- -5'
18209 3' -56.9 NC_004680.1 + 55006 0.66 0.634182
Target:  5'- cGGgCGGCCAggaucaUgCGGcGCAuggcUCGCCGCCu -3'
miRNA:   3'- -UCgGCCGGUa-----AgGCC-UGU----AGUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 17303 0.66 0.63094
Target:  5'- cAGCCGcuccgauugcGCCAcaCCGGggcaccguccgaucACGUUGCCGCCa -3'
miRNA:   3'- -UCGGC----------CGGUaaGGCC--------------UGUAGUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 55440 0.66 0.623378
Target:  5'- uGGCCGGCgaGUUCCGGGgGga--CACUg -3'
miRNA:   3'- -UCGGCCGg-UAAGGCCUgUagugGUGG- -5'
18209 3' -56.9 NC_004680.1 + 11096 0.67 0.613661
Target:  5'- gGGCCGGCUGgcccgauggggaggCCGGuauCAgggUCGCUGCCg -3'
miRNA:   3'- -UCGGCCGGUaa------------GGCCu--GU---AGUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 5974 0.67 0.611503
Target:  5'- gGGCCGuGUCAgugaaccUUccagcgcgucaCCGGGCGgguguUCACCACCg -3'
miRNA:   3'- -UCGGC-CGGU-------AA-----------GGCCUGU-----AGUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 42185 0.67 0.601802
Target:  5'- cGGCCGGUCAUgcgCCccACcUCugCGCCc -3'
miRNA:   3'- -UCGGCCGGUAa--GGccUGuAGugGUGG- -5'
18209 3' -56.9 NC_004680.1 + 52727 0.67 0.580326
Target:  5'- cAGCCGuGaCCcuUUCCGuGAUucUCGCCGCCc -3'
miRNA:   3'- -UCGGC-C-GGu-AAGGC-CUGu-AGUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 13322 0.67 0.580326
Target:  5'- cGGCCGGUCcccgaaaUGGAC-UCGCCGCg -3'
miRNA:   3'- -UCGGCCGGuaag---GCCUGuAGUGGUGg -5'
18209 3' -56.9 NC_004680.1 + 43110 0.67 0.580326
Target:  5'- uGGUCGG-CGUUCacgcuCGGACAg-GCCGCCg -3'
miRNA:   3'- -UCGGCCgGUAAG-----GCCUGUagUGGUGG- -5'
18209 3' -56.9 NC_004680.1 + 14688 0.67 0.580326
Target:  5'- cGCCaGGCgAcUUCgCGGGgAUCGCCGCg -3'
miRNA:   3'- uCGG-CCGgU-AAG-GCCUgUAGUGGUGg -5'
18209 3' -56.9 NC_004680.1 + 42596 0.67 0.580326
Target:  5'- cGCCGGugguccaaCCGUUCCacGACAaCGCCACg -3'
miRNA:   3'- uCGGCC--------GGUAAGGc-CUGUaGUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.