miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18209 5' -50.7 NC_004680.1 + 47677 0.66 0.930194
Target:  5'- gUGUUGGCcggGGUGACGaAGAUGUa--- -3'
miRNA:   3'- aACAACCG---CUACUGCcUCUACAagcg -5'
18209 5' -50.7 NC_004680.1 + 9225 0.66 0.930194
Target:  5'- aUGgc-GCGGUGGCGcGuGcUGUUCGCg -3'
miRNA:   3'- aACaacCGCUACUGC-CuCuACAAGCG- -5'
18209 5' -50.7 NC_004680.1 + 9449 0.66 0.930194
Target:  5'- cUGUUcGGCuGGUGACGGgAGGUGagUGUc -3'
miRNA:   3'- aACAA-CCG-CUACUGCC-UCUACaaGCG- -5'
18209 5' -50.7 NC_004680.1 + 45994 0.66 0.918116
Target:  5'- uUUGacGGCGGUGACGGuGGaGUUgaaGCa -3'
miRNA:   3'- -AACaaCCGCUACUGCCuCUaCAAg--CG- -5'
18209 5' -50.7 NC_004680.1 + 27097 0.66 0.911635
Target:  5'- gUUGUUGGCGGcgcgccUGuagucguCGGAGAgucGUUCGa -3'
miRNA:   3'- -AACAACCGCU------ACu------GCCUCUa--CAAGCg -5'
18209 5' -50.7 NC_004680.1 + 19351 0.66 0.911635
Target:  5'- -gGUUgcGGuCGGUGGCGGuGGUGguggugCGCa -3'
miRNA:   3'- aaCAA--CC-GCUACUGCCuCUACaa----GCG- -5'
18209 5' -50.7 NC_004680.1 + 47948 0.67 0.904863
Target:  5'- ----aGGUGAaugcguUGACGGugcGGUGUUCGUg -3'
miRNA:   3'- aacaaCCGCU------ACUGCCu--CUACAAGCG- -5'
18209 5' -50.7 NC_004680.1 + 25706 0.67 0.890454
Target:  5'- -cGUcGGCGAcGGCGGGGAUGccgaggGCg -3'
miRNA:   3'- aaCAaCCGCUaCUGCCUCUACaag---CG- -5'
18209 5' -50.7 NC_004680.1 + 27842 0.68 0.866754
Target:  5'- ----cGGCGGccgGACGGuGGUGgaCGCg -3'
miRNA:   3'- aacaaCCGCUa--CUGCCuCUACaaGCG- -5'
18209 5' -50.7 NC_004680.1 + 2738 0.68 0.866754
Target:  5'- aUUGUgUGGUcgGGUGACGGguggcAGAaGUUCGCc -3'
miRNA:   3'- -AACA-ACCG--CUACUGCC-----UCUaCAAGCG- -5'
18209 5' -50.7 NC_004680.1 + 56757 0.68 0.866754
Target:  5'- -cGUacUGGCGGgccacugaugUGGCGGGGAcg-UCGCa -3'
miRNA:   3'- aaCA--ACCGCU----------ACUGCCUCUacaAGCG- -5'
18209 5' -50.7 NC_004680.1 + 44794 0.68 0.840715
Target:  5'- cUGUUGuGcCGAUGcCGGGGGaggaGUUCGCc -3'
miRNA:   3'- aACAAC-C-GCUACuGCCUCUa---CAAGCG- -5'
18209 5' -50.7 NC_004680.1 + 32351 0.69 0.82122
Target:  5'- -aGgagGGCGAguuagUGACGGAGAagauucggcgugcUGUggUCGCg -3'
miRNA:   3'- aaCaa-CCGCU-----ACUGCCUCU-------------ACA--AGCG- -5'
18209 5' -50.7 NC_004680.1 + 41523 0.7 0.772278
Target:  5'- ---cUGGCGGUGACGauGGGucgcGUUCGCu -3'
miRNA:   3'- aacaACCGCUACUGC--CUCua--CAAGCG- -5'
18209 5' -50.7 NC_004680.1 + 46102 0.7 0.740394
Target:  5'- ----cGGCGGUGACGGGGcggccuUGggUGCg -3'
miRNA:   3'- aacaaCCGCUACUGCCUCu-----ACaaGCG- -5'
18209 5' -50.7 NC_004680.1 + 24544 0.71 0.696309
Target:  5'- gUGgUGGCGGUGGCGGcGccaaaGUGUUcCGCa -3'
miRNA:   3'- aACaACCGCUACUGCCuC-----UACAA-GCG- -5'
18209 5' -50.7 NC_004680.1 + 26447 0.72 0.639796
Target:  5'- gUGgUGGCGGgguuucUGugGGGGGUGUUCa- -3'
miRNA:   3'- aACaACCGCU------ACugCCUCUACAAGcg -5'
18209 5' -50.7 NC_004680.1 + 44413 0.72 0.605705
Target:  5'- -gGUUGGCGGcUGGCGGGGAguacGgcUGCg -3'
miRNA:   3'- aaCAACCGCU-ACUGCCUCUa---CaaGCG- -5'
18209 5' -50.7 NC_004680.1 + 30943 0.73 0.594376
Target:  5'- gUGUggcUGGCGGUcgucGCGGGGAUGaucgUCGCa -3'
miRNA:   3'- aACA---ACCGCUAc---UGCCUCUACa---AGCG- -5'
18209 5' -50.7 NC_004680.1 + 2099 0.77 0.385086
Target:  5'- uUUGaUGcuGCGAUGGCGGGGAUGUugUCGUg -3'
miRNA:   3'- -AACaAC--CGCUACUGCCUCUACA--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.