miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18210 5' -50.4 NC_004680.1 + 55127 0.66 0.943871
Target:  5'- gUCGaGGUGGCgugACACAgAGAUCAg- -3'
miRNA:   3'- gAGCgCCGUUGa--UGUGUgUCUAGUac -5'
18210 5' -50.4 NC_004680.1 + 30028 0.66 0.943871
Target:  5'- aUCGUGGUGcGCgGCAUGCGGGUCAc- -3'
miRNA:   3'- gAGCGCCGU-UGaUGUGUGUCUAGUac -5'
18210 5' -50.4 NC_004680.1 + 46873 0.66 0.938716
Target:  5'- gCUCGCgGGCGAauucaucgGCGUACAGAUCGg- -3'
miRNA:   3'- -GAGCG-CCGUUga------UGUGUGUCUAGUac -5'
18210 5' -50.4 NC_004680.1 + 7677 0.66 0.938716
Target:  5'- -gCGUGGCGGcCUGCAgGCGGuguUCAUc -3'
miRNA:   3'- gaGCGCCGUU-GAUGUgUGUCu--AGUAc -5'
18210 5' -50.4 NC_004680.1 + 11833 0.66 0.927523
Target:  5'- gUCGcCGcGCGACUucGCGCACAGcGUgAUGa -3'
miRNA:   3'- gAGC-GC-CGUUGA--UGUGUGUC-UAgUAC- -5'
18210 5' -50.4 NC_004680.1 + 49827 0.66 0.921482
Target:  5'- --aGCGGgGAC-GCGCAgaAGAUCAUGa -3'
miRNA:   3'- gagCGCCgUUGaUGUGUg-UCUAGUAC- -5'
18210 5' -50.4 NC_004680.1 + 18449 0.67 0.908514
Target:  5'- -cCGCGGCGGCgUGCAUACGGu---UGa -3'
miRNA:   3'- gaGCGCCGUUG-AUGUGUGUCuaguAC- -5'
18210 5' -50.4 NC_004680.1 + 37082 0.67 0.908514
Target:  5'- cCUCGgGGUAACggauCACGCGGAcCcgGu -3'
miRNA:   3'- -GAGCgCCGUUGau--GUGUGUCUaGuaC- -5'
18210 5' -50.4 NC_004680.1 + 3825 0.67 0.889914
Target:  5'- uUCGCGGUgugccgucggagaauGugUACGCGCGGccCGUGa -3'
miRNA:   3'- gAGCGCCG---------------UugAUGUGUGUCuaGUAC- -5'
18210 5' -50.4 NC_004680.1 + 26043 0.67 0.886881
Target:  5'- -gCGCGGCGGuCUACGCGCuaggggcGAUCcgAUGa -3'
miRNA:   3'- gaGCGCCGUU-GAUGUGUGu------CUAG--UAC- -5'
18210 5' -50.4 NC_004680.1 + 40492 0.67 0.886881
Target:  5'- gUCGUGGCGuggggcuCUGCGCACGucGAggCGUGg -3'
miRNA:   3'- gAGCGCCGUu------GAUGUGUGU--CUa-GUAC- -5'
18210 5' -50.4 NC_004680.1 + 40899 0.68 0.871057
Target:  5'- -cCGCGGCGuggACUACuCACAGGcUCGa- -3'
miRNA:   3'- gaGCGCCGU---UGAUGuGUGUCU-AGUac -5'
18210 5' -50.4 NC_004680.1 + 13046 0.68 0.871057
Target:  5'- gUCaGCGGUGACgcCGCACGGAUgGUa -3'
miRNA:   3'- gAG-CGCCGUUGauGUGUGUCUAgUAc -5'
18210 5' -50.4 NC_004680.1 + 26919 0.68 0.862743
Target:  5'- uUCGUGGCAG--GCACGCGG-UCGUu -3'
miRNA:   3'- gAGCGCCGUUgaUGUGUGUCuAGUAc -5'
18210 5' -50.4 NC_004680.1 + 52662 0.68 0.862743
Target:  5'- gCUCGCGGguAC-GCGCaaGCGGAgCGUGu -3'
miRNA:   3'- -GAGCGCCguUGaUGUG--UGUCUaGUAC- -5'
18210 5' -50.4 NC_004680.1 + 30745 0.68 0.854172
Target:  5'- -gCGCagGGCGACgGCugGCAGGUCGc- -3'
miRNA:   3'- gaGCG--CCGUUGaUGugUGUCUAGUac -5'
18210 5' -50.4 NC_004680.1 + 43853 0.68 0.845351
Target:  5'- aUCGaaGCGACUAuCGCGCAGAUguucCGUGa -3'
miRNA:   3'- gAGCgcCGUUGAU-GUGUGUCUA----GUAC- -5'
18210 5' -50.4 NC_004680.1 + 14690 0.69 0.826998
Target:  5'- uUCGCcaGGCGACUuCGCGgGGAUCGc- -3'
miRNA:   3'- gAGCG--CCGUUGAuGUGUgUCUAGUac -5'
18210 5' -50.4 NC_004680.1 + 14511 0.69 0.826998
Target:  5'- -cUGCGGCGACgGCGgCACAGAcgUCAa- -3'
miRNA:   3'- gaGCGCCGUUGaUGU-GUGUCU--AGUac -5'
18210 5' -50.4 NC_004680.1 + 11900 0.7 0.787747
Target:  5'- -gCGCGGCGACUGCcCGgGGGUUg-- -3'
miRNA:   3'- gaGCGCCGUUGAUGuGUgUCUAGuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.