miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18211 3' -58.2 NC_004680.1 + 9048 0.66 0.568767
Target:  5'- aGCCC----UGCUCGGUccACGCCCGCc- -3'
miRNA:   3'- -UGGGccuuACGAGUCG--UGCGGGUGac -5'
18211 3' -58.2 NC_004680.1 + 17472 0.66 0.568767
Target:  5'- cACCCGGAGcagucggcguUGCaguggCAGCGucCGUUCACUGu -3'
miRNA:   3'- -UGGGCCUU----------ACGa----GUCGU--GCGGGUGAC- -5'
18211 3' -58.2 NC_004680.1 + 42951 0.66 0.547482
Target:  5'- gACCUGGGAgcacaacGCUUGGuCACGCCaCGCg- -3'
miRNA:   3'- -UGGGCCUUa------CGAGUC-GUGCGG-GUGac -5'
18211 3' -58.2 NC_004680.1 + 10477 0.66 0.526455
Target:  5'- uCCUGGGggcgGUGUUCGGUAaGCCCACc- -3'
miRNA:   3'- uGGGCCU----UACGAGUCGUgCGGGUGac -5'
18211 3' -58.2 NC_004680.1 + 46459 0.67 0.516055
Target:  5'- gGCCCGGGgucacgGUGUUacCAGCAcCGCCCGg-- -3'
miRNA:   3'- -UGGGCCU------UACGA--GUCGU-GCGGGUgac -5'
18211 3' -58.2 NC_004680.1 + 23163 0.67 0.495511
Target:  5'- cCCCGGucGUGC-CAGCGgCGCCagugugaaCACUGa -3'
miRNA:   3'- uGGGCCu-UACGaGUCGU-GCGG--------GUGAC- -5'
18211 3' -58.2 NC_004680.1 + 35102 0.67 0.475347
Target:  5'- gGCCCGaGGuugGCUCGGCuGCGUcgugUCACUGg -3'
miRNA:   3'- -UGGGC-CUua-CGAGUCG-UGCG----GGUGAC- -5'
18211 3' -58.2 NC_004680.1 + 15810 0.68 0.4556
Target:  5'- uCCCGGcAUGgaCGGCguguuuuauGCGCCCGCg- -3'
miRNA:   3'- uGGGCCuUACgaGUCG---------UGCGGGUGac -5'
18211 3' -58.2 NC_004680.1 + 11102 0.68 0.436303
Target:  5'- -gCCGGGggGC-CGGCugGCCCGaUGg -3'
miRNA:   3'- ugGGCCUuaCGaGUCGugCGGGUgAC- -5'
18211 3' -58.2 NC_004680.1 + 33849 0.69 0.390211
Target:  5'- cACCgGGAcUGCg-GGCAUGCCCAUg- -3'
miRNA:   3'- -UGGgCCUuACGagUCGUGCGGGUGac -5'
18211 3' -58.2 NC_004680.1 + 55589 0.69 0.364127
Target:  5'- uGCCCGGuugGUGCgUCGGC-UGCUUGCUGg -3'
miRNA:   3'- -UGGGCCu--UACG-AGUCGuGCGGGUGAC- -5'
18211 3' -58.2 NC_004680.1 + 39280 1.08 0.000577
Target:  5'- uACCCGGAAUGCUCAGCACGCCCACUGg -3'
miRNA:   3'- -UGGGCCUUACGAGUCGUGCGGGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.