miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18211 5' -52.1 NC_004680.1 + 22005 0.66 0.902008
Target:  5'- cUGgGGAUGGg-GGCGGCCAGCcacaguaaggCGUCg -3'
miRNA:   3'- -ACgUCUACCagUUGCUGGUUGa---------GCGG- -5'
18211 5' -52.1 NC_004680.1 + 26736 0.66 0.902008
Target:  5'- aGCccGUGGcCu-CGAUgAACUCGCCa -3'
miRNA:   3'- aCGucUACCaGuuGCUGgUUGAGCGG- -5'
18211 5' -52.1 NC_004680.1 + 22648 0.66 0.901315
Target:  5'- aGCAGGUgacGGUCAACaagcccACCGGCUUcggguggguggggGCCg -3'
miRNA:   3'- aCGUCUA---CCAGUUGc-----UGGUUGAG-------------CGG- -5'
18211 5' -52.1 NC_004680.1 + 29973 0.66 0.897807
Target:  5'- gUGCGccaaGUGGU--AUGACCAgcccgagguuauccaGCUCGCCg -3'
miRNA:   3'- -ACGUc---UACCAguUGCUGGU---------------UGAGCGG- -5'
18211 5' -52.1 NC_004680.1 + 30489 0.66 0.894951
Target:  5'- gUGCgGGAUGGUUuuuGAUGugCGGC-CGCa -3'
miRNA:   3'- -ACG-UCUACCAG---UUGCugGUUGaGCGg -5'
18211 5' -52.1 NC_004680.1 + 27745 0.66 0.894951
Target:  5'- aGguGAagcGGUUcccgGACGACUggaccgaucgcgAACUCGCCg -3'
miRNA:   3'- aCguCUa--CCAG----UUGCUGG------------UUGAGCGG- -5'
18211 5' -52.1 NC_004680.1 + 13060 0.66 0.88762
Target:  5'- cGCacGGAUGGU--ACGACC---UCGCCc -3'
miRNA:   3'- aCG--UCUACCAguUGCUGGuugAGCGG- -5'
18211 5' -52.1 NC_004680.1 + 40013 0.66 0.88762
Target:  5'- gGUcGA-GGUCGGCGAgUu-CUCGCCa -3'
miRNA:   3'- aCGuCUaCCAGUUGCUgGuuGAGCGG- -5'
18211 5' -52.1 NC_004680.1 + 43413 0.66 0.88762
Target:  5'- cGCAGcGUcGUCAACGcACUAGgUCGCg -3'
miRNA:   3'- aCGUC-UAcCAGUUGC-UGGUUgAGCGg -5'
18211 5' -52.1 NC_004680.1 + 17933 0.66 0.88762
Target:  5'- cGCGGAUugGGUUGugGACCcg-UCGCa -3'
miRNA:   3'- aCGUCUA--CCAGUugCUGGuugAGCGg -5'
18211 5' -52.1 NC_004680.1 + 12662 0.66 0.884613
Target:  5'- cGCAGAccggGGUgaagcugaucaacCGggccaucgaguacgGCGGCCAGgUCGCCg -3'
miRNA:   3'- aCGUCUa---CCA-------------GU--------------UGCUGGUUgAGCGG- -5'
18211 5' -52.1 NC_004680.1 + 48765 0.66 0.880021
Target:  5'- gUGCAGGUauaGGUacuuGCGGCCGACgcgaGCa -3'
miRNA:   3'- -ACGUCUA---CCAgu--UGCUGGUUGag--CGg -5'
18211 5' -52.1 NC_004680.1 + 33679 0.66 0.872158
Target:  5'- aGCGGGguuGUCGACGuaggGCCAGCgcagGCCg -3'
miRNA:   3'- aCGUCUac-CAGUUGC----UGGUUGag--CGG- -5'
18211 5' -52.1 NC_004680.1 + 48207 0.66 0.872158
Target:  5'- aGUGGAaGGUU--CGGuuGGCUCGCCg -3'
miRNA:   3'- aCGUCUaCCAGuuGCUggUUGAGCGG- -5'
18211 5' -52.1 NC_004680.1 + 49229 0.66 0.864038
Target:  5'- cGCAGAgcauUUAGCGACC---UCGCCg -3'
miRNA:   3'- aCGUCUacc-AGUUGCUGGuugAGCGG- -5'
18211 5' -52.1 NC_004680.1 + 23523 0.66 0.864038
Target:  5'- cGCGGgcGGcCugcACGAUCAGCgUGCCg -3'
miRNA:   3'- aCGUCuaCCaGu--UGCUGGUUGaGCGG- -5'
18211 5' -52.1 NC_004680.1 + 40296 0.67 0.855669
Target:  5'- cGU--GUGGaUCAGC-ACCAGCUcCGCCa -3'
miRNA:   3'- aCGucUACC-AGUUGcUGGUUGA-GCGG- -5'
18211 5' -52.1 NC_004680.1 + 41297 0.67 0.855669
Target:  5'- gGCGGuauUGGUgGACGauGCCGcuGCugaUCGCCg -3'
miRNA:   3'- aCGUCu--ACCAgUUGC--UGGU--UG---AGCGG- -5'
18211 5' -52.1 NC_004680.1 + 55008 0.67 0.855669
Target:  5'- gGCGGccaGGaUCAuGCGGCgCAugGCUCGCCg -3'
miRNA:   3'- aCGUCua-CC-AGU-UGCUG-GU--UGAGCGG- -5'
18211 5' -52.1 NC_004680.1 + 14243 0.67 0.852253
Target:  5'- gUGCcGAUGGUCAAUguugguGACCAGCcgauguauugggaUGCCa -3'
miRNA:   3'- -ACGuCUACCAGUUG------CUGGUUGa------------GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.