Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18212 | 3' | -51 | NC_004680.1 | + | 26408 | 0.66 | 0.936019 |
|
Target: 5'- aGAGggugUCGCGuuCGaugaaGAAGUCGAUCGCu- -3' miRNA: 3'- gCUCa---AGUGU--GC-----CUUCAGCUAGCGug -5' |
|||||||
| 18212 | 3' | -51 | NC_004680.1 | + | 54937 | 0.66 | 0.935482 |
|
Target: 5'- aGGGUUCcgggcagACGCGGAGGUguuUGAgcgGCACg -3' miRNA: 3'- gCUCAAG-------UGUGCCUUCA---GCUag-CGUG- -5' |
|||||||
| 18212 | 3' | -51 | NC_004680.1 | + | 6973 | 0.66 | 0.924731 |
|
Target: 5'- aGGG-UCGCG-GGAAGUCGG-CGCGa -3' miRNA: 3'- gCUCaAGUGUgCCUUCAGCUaGCGUg -5' |
|||||||
| 18212 | 3' | -51 | NC_004680.1 | + | 17463 | 0.67 | 0.905654 |
|
Target: 5'- cCGGGUauUCACcCGGAgcAGUCGGcgUUGCAg -3' miRNA: 3'- -GCUCA--AGUGuGCCU--UCAGCU--AGCGUg -5' |
|||||||
| 18212 | 3' | -51 | NC_004680.1 | + | 4242 | 0.68 | 0.851544 |
|
Target: 5'- --cGUUgACuacCGGAAGUUGAUCGuCACu -3' miRNA: 3'- gcuCAAgUGu--GCCUUCAGCUAGC-GUG- -5' |
|||||||
| 18212 | 3' | -51 | NC_004680.1 | + | 9656 | 0.72 | 0.656761 |
|
Target: 5'- aGcAGUUguCGCGuGAGGUUGAUCGUGCg -3' miRNA: 3'- gC-UCAAguGUGC-CUUCAGCUAGCGUG- -5' |
|||||||
| 18212 | 3' | -51 | NC_004680.1 | + | 39902 | 0.98 | 0.017356 |
|
Target: 5'- uCGAGUUCACACGGAAGUC-AUCGCACg -3' miRNA: 3'- -GCUCAAGUGUGCCUUCAGcUAGCGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home