miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18212 5' -54.1 NC_004680.1 + 55397 0.66 0.809341
Target:  5'- aGGGCU-GCCGcACCUCGACaCCccaaaacuggucgcgGAAGCa -3'
miRNA:   3'- -CUUGAgCGGC-UGGAGCUG-GGa--------------CUUUG- -5'
18212 5' -54.1 NC_004680.1 + 2642 0.66 0.804574
Target:  5'- cGACUCGCCGAaguccagcccauaCUUGACCCa----- -3'
miRNA:   3'- cUUGAGCGGCUg------------GAGCUGGGacuuug -5'
18212 5' -54.1 NC_004680.1 + 54289 0.66 0.798794
Target:  5'- -uGCUCGCUGcGCCa-GACCC-GGAACu -3'
miRNA:   3'- cuUGAGCGGC-UGGagCUGGGaCUUUG- -5'
18212 5' -54.1 NC_004680.1 + 17160 0.66 0.798794
Target:  5'- cGAACggcugCGCCGGgaUCGACaCCUGGGc- -3'
miRNA:   3'- -CUUGa----GCGGCUggAGCUG-GGACUUug -5'
18212 5' -54.1 NC_004680.1 + 5296 0.66 0.789022
Target:  5'- cGAGgUCuGCCGGCCagCGGCCUUGuaguccuuGACg -3'
miRNA:   3'- -CUUgAG-CGGCUGGa-GCUGGGACu-------UUG- -5'
18212 5' -54.1 NC_004680.1 + 54375 0.66 0.779086
Target:  5'- -cACUUGCCGACCggGAUCCcGAu-- -3'
miRNA:   3'- cuUGAGCGGCUGGagCUGGGaCUuug -5'
18212 5' -54.1 NC_004680.1 + 25428 0.66 0.778084
Target:  5'- cGAGCUugaCGCCGaACUggCGGCCCUcgucuacGAGGCg -3'
miRNA:   3'- -CUUGA---GCGGC-UGGa-GCUGGGA-------CUUUG- -5'
18212 5' -54.1 NC_004680.1 + 50487 0.67 0.758765
Target:  5'- -uACUCaCCGAagcCCUCagcgaaGCCCUGAAGCg -3'
miRNA:   3'- cuUGAGcGGCU---GGAGc-----UGGGACUUUG- -5'
18212 5' -54.1 NC_004680.1 + 39334 0.67 0.758765
Target:  5'- cAACUCGCCgGACCU-GACggguuccuaucaCCUGAGAa -3'
miRNA:   3'- cUUGAGCGG-CUGGAgCUG------------GGACUUUg -5'
18212 5' -54.1 NC_004680.1 + 49941 0.68 0.684139
Target:  5'- uAACgucCGCCGAUgUCGGCgCUGAAccGCg -3'
miRNA:   3'- cUUGa--GCGGCUGgAGCUGgGACUU--UG- -5'
18212 5' -54.1 NC_004680.1 + 13616 0.68 0.650074
Target:  5'- aAACUCGCCGugUagUCGuaggugcgccagaACCCUGAAu- -3'
miRNA:   3'- cUUGAGCGGCugG--AGC-------------UGGGACUUug -5'
18212 5' -54.1 NC_004680.1 + 26751 0.69 0.64014
Target:  5'- uGAACUCGCC-ACCgUCauuGCCCUGAuGACc -3'
miRNA:   3'- -CUUGAGCGGcUGG-AGc--UGGGACU-UUG- -5'
18212 5' -54.1 NC_004680.1 + 19456 0.69 0.633514
Target:  5'- uGAGCauuUCGgCGAcaacgccaucaucacCCUCGACCCUGguGCu -3'
miRNA:   3'- -CUUG---AGCgGCU---------------GGAGCUGGGACuuUG- -5'
18212 5' -54.1 NC_004680.1 + 55367 0.69 0.607025
Target:  5'- gGAACUCGCCGGCCacuuCgCUGAAGa -3'
miRNA:   3'- -CUUGAGCGGCUGGagcuGgGACUUUg -5'
18212 5' -54.1 NC_004680.1 + 47491 0.7 0.530916
Target:  5'- cGGAUggGCUGGCCUCGgaaACCCUGAc-- -3'
miRNA:   3'- -CUUGagCGGCUGGAGC---UGGGACUuug -5'
18212 5' -54.1 NC_004680.1 + 27119 0.71 0.520295
Target:  5'- cGAACUCGCCGGCCaa---CCUGggGu -3'
miRNA:   3'- -CUUGAGCGGCUGGagcugGGACuuUg -5'
18212 5' -54.1 NC_004680.1 + 57335 0.72 0.438834
Target:  5'- ----aCGCCGGCCggCGAaCCUGAAACg -3'
miRNA:   3'- cuugaGCGGCUGGa-GCUgGGACUUUG- -5'
18212 5' -54.1 NC_004680.1 + 39935 1.09 0.001513
Target:  5'- aGAACUCGCCGACCUCGACCCUGAAACc -3'
miRNA:   3'- -CUUGAGCGGCUGGAGCUGGGACUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.