miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18213 3' -62.1 NC_004680.1 + 40005 1.09 0.000252
Target:  5'- uACGGCUGACGCAGCGGGCCGUCACCCc -3'
miRNA:   3'- -UGCCGACUGCGUCGCCCGGCAGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 18865 0.66 0.414774
Target:  5'- uCGGCUacGGCGUGGCGGGga-UCACCg -3'
miRNA:   3'- uGCCGA--CUGCGUCGCCCggcAGUGGg -5'
18213 3' -62.1 NC_004680.1 + 46361 0.66 0.3718
Target:  5'- gACGGCccgGGCGguGCuGGuaacaCCGUgACCCc -3'
miRNA:   3'- -UGCCGa--CUGCguCGcCC-----GGCAgUGGG- -5'
18213 3' -62.1 NC_004680.1 + 34282 0.67 0.354678
Target:  5'- cCGGCagGGCGCuuuuuugcguucuGGCGGG-UGUCACuCCg -3'
miRNA:   3'- uGCCGa-CUGCG-------------UCGCCCgGCAGUG-GG- -5'
18213 3' -62.1 NC_004680.1 + 12449 0.67 0.347512
Target:  5'- cCGGUgGugGCGGCGGcccgauggcuGCCGgugCGCCa -3'
miRNA:   3'- uGCCGaCugCGUCGCC----------CGGCa--GUGGg -5'
18213 3' -62.1 NC_004680.1 + 5602 0.67 0.347512
Target:  5'- cCGGC-GACGCugcuggucuGCGGGCgGgCACCa -3'
miRNA:   3'- uGCCGaCUGCGu--------CGCCCGgCaGUGGg -5'
18213 3' -62.1 NC_004680.1 + 38808 0.67 0.342792
Target:  5'- aACGGCUGGgacgaacugcacaaGCAGguaGGGCCGaacUCGCCa -3'
miRNA:   3'- -UGCCGACUg-------------CGUCg--CCCGGC---AGUGGg -5'
18213 3' -62.1 NC_004680.1 + 4936 0.68 0.295349
Target:  5'- cCGGCUGA-GUAuGCGGcGCUGcCGCCUg -3'
miRNA:   3'- uGCCGACUgCGU-CGCC-CGGCaGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 825 0.69 0.261958
Target:  5'- cGCGGCgUGgauuuGCGguGUGGaGCUG-CACCCg -3'
miRNA:   3'- -UGCCG-AC-----UGCguCGCC-CGGCaGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 1820 0.69 0.260056
Target:  5'- -gGGCUGGgauucgacgaucgcCGCgugGGCGGGCCGguuCCCg -3'
miRNA:   3'- ugCCGACU--------------GCG---UCGCCCGGCaguGGG- -5'
18213 3' -62.1 NC_004680.1 + 36265 0.69 0.25566
Target:  5'- gACGGCUGcCGCgAGCGaGGgauucaacguCCG-CACCCu -3'
miRNA:   3'- -UGCCGACuGCG-UCGC-CC----------GGCaGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 22672 0.78 0.058497
Target:  5'- cCGGCUucggGugGguGgGGGCCGUCGCCg -3'
miRNA:   3'- uGCCGA----CugCguCgCCCGGCAGUGGg -5'
18213 3' -62.1 NC_004680.1 + 47844 0.73 0.146292
Target:  5'- cCGGCUGGCuGCGGCGguuGGCCGggUCGCUg -3'
miRNA:   3'- uGCCGACUG-CGUCGC---CCGGC--AGUGGg -5'
18213 3' -62.1 NC_004680.1 + 58570 0.72 0.158204
Target:  5'- cACGGCgGACGCGacacGUGGGCCGaCACa- -3'
miRNA:   3'- -UGCCGaCUGCGU----CGCCCGGCaGUGgg -5'
18213 3' -62.1 NC_004680.1 + 6303 0.71 0.184684
Target:  5'- gGCGGUaucgcUGACG--GCaGGGCCGuUCACCCa -3'
miRNA:   3'- -UGCCG-----ACUGCguCG-CCCGGC-AGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 9845 0.71 0.189461
Target:  5'- -aGGCUGGCGCGGUGgcuGGCCG-CGCg- -3'
miRNA:   3'- ugCCGACUGCGUCGC---CCGGCaGUGgg -5'
18213 3' -62.1 NC_004680.1 + 36784 0.7 0.214462
Target:  5'- gACuGCUGAUGCGcucaagcGCGGGuuGgcuuUCACCCa -3'
miRNA:   3'- -UGcCGACUGCGU-------CGCCCggC----AGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 8314 0.69 0.243437
Target:  5'- uGCGGCccGACcCGGCGGGaaCGaUCGCCCu -3'
miRNA:   3'- -UGCCGa-CUGcGUCGCCCg-GC-AGUGGG- -5'
18213 3' -62.1 NC_004680.1 + 21657 0.74 0.115313
Target:  5'- cCGGCUGACuGUGcGCGGuGCCGUUGCCg -3'
miRNA:   3'- uGCCGACUG-CGU-CGCC-CGGCAGUGGg -5'
18213 3' -62.1 NC_004680.1 + 22782 0.66 0.402435
Target:  5'- gGCGGUggcguucagguagGAgGCGGCGacGGCCccCACCCa -3'
miRNA:   3'- -UGCCGa------------CUgCGUCGC--CCGGcaGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.