Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 11185 | 0.69 | 0.268382 |
Target: 5'- cGCGGCguucugcuugGGCGCcG-GGGCCGcCACCa -3' miRNA: 3'- -UGCCGa---------CUGCGuCgCCCGGCaGUGGg -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 825 | 0.69 | 0.261958 |
Target: 5'- cGCGGCgUGgauuuGCGguGUGGaGCUG-CACCCg -3' miRNA: 3'- -UGCCG-AC-----UGCguCGCC-CGGCaGUGGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 1820 | 0.69 | 0.260056 |
Target: 5'- -gGGCUGGgauucgacgaucgcCGCgugGGCGGGCCGguuCCCg -3' miRNA: 3'- ugCCGACU--------------GCG---UCGCCCGGCaguGGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 36265 | 0.69 | 0.25566 |
Target: 5'- gACGGCUGcCGCgAGCGaGGgauucaacguCCG-CACCCu -3' miRNA: 3'- -UGCCGACuGCG-UCGC-CC----------GGCaGUGGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 8314 | 0.69 | 0.243437 |
Target: 5'- uGCGGCccGACcCGGCGGGaaCGaUCGCCCu -3' miRNA: 3'- -UGCCGa-CUGcGUCGCCCg-GC-AGUGGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 36784 | 0.7 | 0.214462 |
Target: 5'- gACuGCUGAUGCGcucaagcGCGGGuuGgcuuUCACCCa -3' miRNA: 3'- -UGcCGACUGCGU-------CGCCCggC----AGUGGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 58367 | 0.71 | 0.204447 |
Target: 5'- gGCGGCUuuggcGAUGCGuuguugguauucGCgGGGCCGuucUCGCCCg -3' miRNA: 3'- -UGCCGA-----CUGCGU------------CG-CCCGGC---AGUGGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 55940 | 0.71 | 0.199341 |
Target: 5'- gAUGGUUGuCGCGGCGGGCgucuCGUCAaaggugagugUCCa -3' miRNA: 3'- -UGCCGACuGCGUCGCCCG----GCAGU----------GGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 19606 | 0.71 | 0.194346 |
Target: 5'- gUGGUguuaccAC-CGGCGGcGCCGUCACCCg -3' miRNA: 3'- uGCCGac----UGcGUCGCC-CGGCAGUGGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 9845 | 0.71 | 0.189461 |
Target: 5'- -aGGCUGGCGCGGUGgcuGGCCG-CGCg- -3' miRNA: 3'- ugCCGACUGCGUCGC---CCGGCaGUGgg -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 6303 | 0.71 | 0.184684 |
Target: 5'- gGCGGUaucgcUGACG--GCaGGGCCGuUCACCCa -3' miRNA: 3'- -UGCCG-----ACUGCguCG-CCCGGC-AGUGGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 42668 | 0.71 | 0.175448 |
Target: 5'- cGCGGCUGAUGCcGU--GCCG-CACCCu -3' miRNA: 3'- -UGCCGACUGCGuCGccCGGCaGUGGG- -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 58570 | 0.72 | 0.158204 |
Target: 5'- cACGGCgGACGCGacacGUGGGCCGaCACa- -3' miRNA: 3'- -UGCCGaCUGCGU----CGCCCGGCaGUGgg -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 47844 | 0.73 | 0.146292 |
Target: 5'- cCGGCUGGCuGCGGCGguuGGCCGggUCGCUg -3' miRNA: 3'- uGCCGACUG-CGUCGC---CCGGC--AGUGGg -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 21657 | 0.74 | 0.115313 |
Target: 5'- cCGGCUGACuGUGcGCGGuGCCGUUGCCg -3' miRNA: 3'- uGCCGACUG-CGU-CGCC-CGGCAGUGGg -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 22672 | 0.78 | 0.058497 |
Target: 5'- cCGGCUucggGugGguGgGGGCCGUCGCCg -3' miRNA: 3'- uGCCGA----CugCguCgCCCGGCAGUGGg -5' |
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18213 | 3' | -62.1 | NC_004680.1 | + | 40005 | 1.09 | 0.000252 |
Target: 5'- uACGGCUGACGCAGCGGGCCGUCACCCc -3' miRNA: 3'- -UGCCGACUGCGUCGCCCGGCAGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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