miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18213 5' -57.2 NC_004680.1 + 57661 0.66 0.613798
Target:  5'- --cGGUGAUGGCCauga-ACCGGGAGa -3'
miRNA:   3'- ccuCCGCUGCCGGgauugUGGCCUUU- -5'
18213 5' -57.2 NC_004680.1 + 24952 0.66 0.602978
Target:  5'- cGGuGGCaaaGGCGGCgaUGugACCGGAGc -3'
miRNA:   3'- -CCuCCG---CUGCCGggAUugUGGCCUUu -5'
18213 5' -57.2 NC_004680.1 + 33204 0.66 0.592182
Target:  5'- uGGuGGCGauGCGGCCCUcuucgacgucGCGgCGGAGu -3'
miRNA:   3'- -CCuCCGC--UGCCGGGAu---------UGUgGCCUUu -5'
18213 5' -57.2 NC_004680.1 + 649 0.66 0.592182
Target:  5'- cGGAuGGUGuuCGGCCCUGGCucacugUCGGGGc -3'
miRNA:   3'- -CCU-CCGCu-GCCGGGAUUGu-----GGCCUUu -5'
18213 5' -57.2 NC_004680.1 + 12629 0.67 0.581419
Target:  5'- uGGAcGCGAUGGCaCCcGGCGCUGGu-- -3'
miRNA:   3'- -CCUcCGCUGCCG-GGaUUGUGGCCuuu -5'
18213 5' -57.2 NC_004680.1 + 57401 0.67 0.570697
Target:  5'- cGuGGaCGACGGCC---GCACUGGAAc -3'
miRNA:   3'- cCuCC-GCUGCCGGgauUGUGGCCUUu -5'
18213 5' -57.2 NC_004680.1 + 5359 0.67 0.570697
Target:  5'- -cGGGUGccACGGCCCUGGcCACCGa--- -3'
miRNA:   3'- ccUCCGC--UGCCGGGAUU-GUGGCcuuu -5'
18213 5' -57.2 NC_004680.1 + 11086 0.67 0.549406
Target:  5'- cGGccuuGGUGGCGGCCCcGGCGCCc---- -3'
miRNA:   3'- -CCu---CCGCUGCCGGGaUUGUGGccuuu -5'
18213 5' -57.2 NC_004680.1 + 28110 0.67 0.549406
Target:  5'- aGGAcuguuGcGCGACGGCCUguACAucCCGGGGAu -3'
miRNA:   3'- -CCU-----C-CGCUGCCGGGauUGU--GGCCUUU- -5'
18213 5' -57.2 NC_004680.1 + 47628 0.67 0.538852
Target:  5'- cGAGGCGugGGCUgagcagaucgAACugUGGAAGu -3'
miRNA:   3'- cCUCCGCugCCGGga--------UUGugGCCUUU- -5'
18213 5' -57.2 NC_004680.1 + 27124 0.68 0.497399
Target:  5'- cGGugcuGCGACGuGCCCUcaacgaaaccACACCGGAGGa -3'
miRNA:   3'- -CCuc--CGCUGC-CGGGAu---------UGUGGCCUUU- -5'
18213 5' -57.2 NC_004680.1 + 28814 0.68 0.497399
Target:  5'- cGGAGGCGAUcgcgaucaccaaGGCaCUguugGACGCCGGc-- -3'
miRNA:   3'- -CCUCCGCUG------------CCG-GGa---UUGUGGCCuuu -5'
18213 5' -57.2 NC_004680.1 + 20173 0.68 0.477211
Target:  5'- aGGAucaGGCGGCGGUggaUCUGAUugUGGAGc -3'
miRNA:   3'- -CCU---CCGCUGCCG---GGAUUGugGCCUUu -5'
18213 5' -57.2 NC_004680.1 + 18976 0.69 0.447717
Target:  5'- gGGuGGC-ACGGCC---GCGCCGGggGa -3'
miRNA:   3'- -CCuCCGcUGCCGGgauUGUGGCCuuU- -5'
18213 5' -57.2 NC_004680.1 + 11099 0.69 0.438111
Target:  5'- gGGGGGcCGGCuGGCCCgaugggGAgGCCGGu-- -3'
miRNA:   3'- -CCUCC-GCUG-CCGGGa-----UUgUGGCCuuu -5'
18213 5' -57.2 NC_004680.1 + 33316 0.69 0.434302
Target:  5'- uGGuuguGGaUGGCGGCCCgguagucguugagGACGCCGGGGc -3'
miRNA:   3'- -CCu---CC-GCUGCCGGGa------------UUGUGGCCUUu -5'
18213 5' -57.2 NC_004680.1 + 38850 0.69 0.418332
Target:  5'- gGGGGGCGGgGgaaccauGCCC--GCGCCGGGAc -3'
miRNA:   3'- -CCUCCGCUgC-------CGGGauUGUGGCCUUu -5'
18213 5' -57.2 NC_004680.1 + 31906 0.7 0.410023
Target:  5'- cGGAGGCuugccGAUcaGGCCgaAGCACUGGggGa -3'
miRNA:   3'- -CCUCCG-----CUG--CCGGgaUUGUGGCCuuU- -5'
18213 5' -57.2 NC_004680.1 + 3879 0.7 0.391931
Target:  5'- uGGAGaccuCGACGGCCU--GCACCGGu-- -3'
miRNA:   3'- -CCUCc---GCUGCCGGGauUGUGGCCuuu -5'
18213 5' -57.2 NC_004680.1 + 22762 0.71 0.324954
Target:  5'- aGGcGGCGACGGCCCccaccCACCcGAAGc -3'
miRNA:   3'- -CCuCCGCUGCCGGGauu--GUGGcCUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.