miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18215 3' -56.2 NC_004680.1 + 18609 0.66 0.750915
Target:  5'- cCCGGUgu--UGGUGCGGgcAUCGCGGa -3'
miRNA:   3'- -GGCCGguguACCACGCUgaUGGUGCC- -5'
18215 3' -56.2 NC_004680.1 + 28270 0.66 0.750915
Target:  5'- aCgGGCCGgGUGuccaCGACcgGCCGCGGa -3'
miRNA:   3'- -GgCCGGUgUACcac-GCUGa-UGGUGCC- -5'
18215 3' -56.2 NC_004680.1 + 25642 0.66 0.740776
Target:  5'- gCCGacGCCGCAcccaaacacUGCGACaACCACGGc -3'
miRNA:   3'- -GGC--CGGUGUacc------ACGCUGaUGGUGCC- -5'
18215 3' -56.2 NC_004680.1 + 37209 0.66 0.730534
Target:  5'- aCCGGCCACAcaaacucgucGGUGCccauGAUcuguguguaguUGCCGCGa -3'
miRNA:   3'- -GGCCGGUGUa---------CCACG----CUG-----------AUGGUGCc -5'
18215 3' -56.2 NC_004680.1 + 23089 0.66 0.730534
Target:  5'- gCUGGCacgACcgGG-GCGAaugaaGCCACGGg -3'
miRNA:   3'- -GGCCGg--UGuaCCaCGCUga---UGGUGCC- -5'
18215 3' -56.2 NC_004680.1 + 46312 0.66 0.709779
Target:  5'- aCCGGCCucgaauccuggGCAUaGGcauUGCGugUACCG-GGu -3'
miRNA:   3'- -GGCCGG-----------UGUA-CC---ACGCugAUGGUgCC- -5'
18215 3' -56.2 NC_004680.1 + 25456 0.66 0.709779
Target:  5'- aCCGGCagaaACGcGccGCGACUACCGCc- -3'
miRNA:   3'- -GGCCGg---UGUaCcaCGCUGAUGGUGcc -5'
18215 3' -56.2 NC_004680.1 + 3454 0.66 0.709779
Target:  5'- gCGGCCGgcgaguCGUGG-GCGuCUAUCcgGCGGa -3'
miRNA:   3'- gGCCGGU------GUACCaCGCuGAUGG--UGCC- -5'
18215 3' -56.2 NC_004680.1 + 29076 0.66 0.708733
Target:  5'- uCCGGCgGCgccgcaGUGGUGUcACUGCUgaugucuaucggcGCGGa -3'
miRNA:   3'- -GGCCGgUG------UACCACGcUGAUGG-------------UGCC- -5'
18215 3' -56.2 NC_004680.1 + 33487 0.66 0.699288
Target:  5'- gCGGCCACAuuccUGGU-CGccacacccuccGCUACCGCa- -3'
miRNA:   3'- gGCCGGUGU----ACCAcGC-----------UGAUGGUGcc -5'
18215 3' -56.2 NC_004680.1 + 4579 0.66 0.699288
Target:  5'- gCGGCUGCGuccUGGU-CGACUGCCGg-- -3'
miRNA:   3'- gGCCGGUGU---ACCAcGCUGAUGGUgcc -5'
18215 3' -56.2 NC_004680.1 + 38697 0.67 0.656809
Target:  5'- aCGGCCcagagcauucgACAUGGccUGCcGCUccaaccgggccaGCCACGGa -3'
miRNA:   3'- gGCCGG-----------UGUACC--ACGcUGA------------UGGUGCC- -5'
18215 3' -56.2 NC_004680.1 + 50246 0.67 0.656809
Target:  5'- aCCGGCCc---GGUGCGACcgcgACC-CGa -3'
miRNA:   3'- -GGCCGGuguaCCACGCUGa---UGGuGCc -5'
18215 3' -56.2 NC_004680.1 + 25835 0.67 0.646111
Target:  5'- gCGGCCGCcaccacgGCGAg-ACCACGGa -3'
miRNA:   3'- gGCCGGUGuacca--CGCUgaUGGUGCC- -5'
18215 3' -56.2 NC_004680.1 + 48221 0.67 0.646111
Target:  5'- --cGCCACGUGGaGCGACUuUCACa- -3'
miRNA:   3'- ggcCGGUGUACCaCGCUGAuGGUGcc -5'
18215 3' -56.2 NC_004680.1 + 25741 0.67 0.646111
Target:  5'- gCCGGUgccgugguuguCGCAguguuugGGUGCGGCgucgGCgACGGc -3'
miRNA:   3'- -GGCCG-----------GUGUa------CCACGCUGa---UGgUGCC- -5'
18215 3' -56.2 NC_004680.1 + 33157 0.67 0.6354
Target:  5'- uUGGCCAUGgcGGUGUuGCgguCCACGGa -3'
miRNA:   3'- gGCCGGUGUa-CCACGcUGau-GGUGCC- -5'
18215 3' -56.2 NC_004680.1 + 13855 0.67 0.6354
Target:  5'- -gGGCgCGCAUGGgccGCGACaGCaACGGc -3'
miRNA:   3'- ggCCG-GUGUACCa--CGCUGaUGgUGCC- -5'
18215 3' -56.2 NC_004680.1 + 20465 0.67 0.6354
Target:  5'- -gGGCCACAUGcUGuCGAUgcggucaggUAUCGCGGa -3'
miRNA:   3'- ggCCGGUGUACcAC-GCUG---------AUGGUGCC- -5'
18215 3' -56.2 NC_004680.1 + 12613 0.68 0.624686
Target:  5'- gCCGGCgGCAUGGcgcuggacGCGAUggcACC-CGGc -3'
miRNA:   3'- -GGCCGgUGUACCa-------CGCUGa--UGGuGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.