miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18216 3' -54.9 NC_004680.1 + 30740 0.66 0.752212
Target:  5'- uGGAUGCgcagggCGACgGCugGCAG-GUCGCGc -3'
miRNA:   3'- -CCUACGag----GCUGgCG--UGUCaCAGUGC- -5'
18216 3' -54.9 NC_004680.1 + 33611 0.67 0.741922
Target:  5'- cGGcgGCgaUCCGcACCGCAUcuGGUucGUCGCa -3'
miRNA:   3'- -CCuaCG--AGGC-UGGCGUG--UCA--CAGUGc -5'
18216 3' -54.9 NC_004680.1 + 48684 0.67 0.689064
Target:  5'- cGAgGCUUCGACgauCACGGUGUCGCc -3'
miRNA:   3'- cCUaCGAGGCUGgc-GUGUCACAGUGc -5'
18216 3' -54.9 NC_004680.1 + 51653 0.67 0.687989
Target:  5'- uGGcgGCUCCGGgaagguCCGCGCauaccucGGUGaugCACGa -3'
miRNA:   3'- -CCuaCGAGGCU------GGCGUG-------UCACa--GUGC- -5'
18216 3' -54.9 NC_004680.1 + 59161 0.67 0.687989
Target:  5'- gGGuuGUGCUUggCGGCCGCAuuguuggcaggucCAGuUGUCGCGg -3'
miRNA:   3'- -CC--UACGAG--GCUGGCGU-------------GUC-ACAGUGC- -5'
18216 3' -54.9 NC_004680.1 + 52410 0.68 0.66747
Target:  5'- cGGUGCUUaCGAguCCGCGCAGacUCACGc -3'
miRNA:   3'- cCUACGAG-GCU--GGCGUGUCacAGUGC- -5'
18216 3' -54.9 NC_004680.1 + 24553 0.68 0.66747
Target:  5'- ---cGCUUCcGCCGCACcgaucAGUGUCACc -3'
miRNA:   3'- ccuaCGAGGcUGGCGUG-----UCACAGUGc -5'
18216 3' -54.9 NC_004680.1 + 34824 0.7 0.51689
Target:  5'- aGAUGaccaccaaUGAUCGCGCAGUGUCACc -3'
miRNA:   3'- cCUACgag-----GCUGGCGUGUCACAGUGc -5'
18216 3' -54.9 NC_004680.1 + 29055 0.71 0.503439
Target:  5'- uGGGUGUcagugcugucagugUCCGGCgGCGCcgcaguGGUGUCACu -3'
miRNA:   3'- -CCUACG--------------AGGCUGgCGUG------UCACAGUGc -5'
18216 3' -54.9 NC_004680.1 + 38106 0.72 0.436802
Target:  5'- cGGAUGUagUCCGugUGCcaaaaccaaACGGUGUCAaCGg -3'
miRNA:   3'- -CCUACG--AGGCugGCG---------UGUCACAGU-GC- -5'
18216 3' -54.9 NC_004680.1 + 42555 1.12 0.000804
Target:  5'- cGGAUGCUCCGACCGCACAGUGUCACGg -3'
miRNA:   3'- -CCUACGAGGCUGGCGUGUCACAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.