miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18216 5' -59.4 NC_004680.1 + 48798 0.65 0.551162
Target:  5'- uGGCACGcgucccaGCAUCggaaAGUgGUGGCGcAGGCg -3'
miRNA:   3'- -CCGUGC-------CGUAG----UCGgCGCCGC-UUCGg -5'
18216 5' -59.4 NC_004680.1 + 7171 0.65 0.551162
Target:  5'- cGGCGCuGaAUCAGUcgccauaCGCGGUGccGCCg -3'
miRNA:   3'- -CCGUGcCgUAGUCG-------GCGCCGCuuCGG- -5'
18216 5' -59.4 NC_004680.1 + 9689 0.66 0.545977
Target:  5'- aGGCuGCGGguUCucgcauuguggaugGGuUCGCGGCGAauggugugucggcgGGCCg -3'
miRNA:   3'- -CCG-UGCCguAG--------------UC-GGCGCCGCU--------------UCGG- -5'
18216 5' -59.4 NC_004680.1 + 22796 0.66 0.541841
Target:  5'- uGCACGGUucCGGUgGCGGUGgcGUUc -3'
miRNA:   3'- cCGUGCCGuaGUCGgCGCCGCuuCGG- -5'
18216 5' -59.4 NC_004680.1 + 41897 0.66 0.535656
Target:  5'- cGGCACGGU-UCAccgagaagaaugcuuGCaguGCGGUGAGGUg -3'
miRNA:   3'- -CCGUGCCGuAGU---------------CGg--CGCCGCUUCGg -5'
18216 5' -59.4 NC_004680.1 + 11096 0.66 0.531546
Target:  5'- gGGC-CGGCu--GGcCCGaUGGgGAGGCCg -3'
miRNA:   3'- -CCGuGCCGuagUC-GGC-GCCgCUUCGG- -5'
18216 5' -59.4 NC_004680.1 + 12698 0.66 0.531546
Target:  5'- aGUACGGCGgccaGGUCGCcGCGAucGGCg -3'
miRNA:   3'- cCGUGCCGUag--UCGGCGcCGCU--UCGg -5'
18216 5' -59.4 NC_004680.1 + 25924 0.66 0.531546
Target:  5'- gGGCuccgUGGUcUC-GCCGUGGUGGcGGCCg -3'
miRNA:   3'- -CCGu---GCCGuAGuCGGCGCCGCU-UCGG- -5'
18216 5' -59.4 NC_004680.1 + 42290 0.66 0.521323
Target:  5'- uGCACGGUG-CGGUgGUGGC--AGCCc -3'
miRNA:   3'- cCGUGCCGUaGUCGgCGCCGcuUCGG- -5'
18216 5' -59.4 NC_004680.1 + 13855 0.66 0.520304
Target:  5'- gGGCGC-GCAUgGGCCGCgacagcaacGGCGAcugggacgguaacGGCa -3'
miRNA:   3'- -CCGUGcCGUAgUCGGCG---------CCGCU-------------UCGg -5'
18216 5' -59.4 NC_004680.1 + 43637 0.66 0.520304
Target:  5'- aGCAgCGGCAgcguuccCGGCCGCccuggucgaacguGGCGgcGUCg -3'
miRNA:   3'- cCGU-GCCGUa------GUCGGCG-------------CCGCuuCGG- -5'
18216 5' -59.4 NC_004680.1 + 41661 0.66 0.520304
Target:  5'- aGGUGCugcgGGCAguacaccgauUCuGCgGCGGCGAcgaagaaAGCCa -3'
miRNA:   3'- -CCGUG----CCGU----------AGuCGgCGCCGCU-------UCGG- -5'
18216 5' -59.4 NC_004680.1 + 18979 0.66 0.511177
Target:  5'- uGGCACGGCcgC-GCCG-GG-GGAGUUc -3'
miRNA:   3'- -CCGUGCCGuaGuCGGCgCCgCUUCGG- -5'
18216 5' -59.4 NC_004680.1 + 27365 0.66 0.501114
Target:  5'- uGGCGaGGUucUCGGCgGCaGCGucGCCg -3'
miRNA:   3'- -CCGUgCCGu-AGUCGgCGcCGCuuCGG- -5'
18216 5' -59.4 NC_004680.1 + 12791 0.66 0.501114
Target:  5'- -cUugGGCGcCGaUCGCGGCGAccuGGCCg -3'
miRNA:   3'- ccGugCCGUaGUcGGCGCCGCU---UCGG- -5'
18216 5' -59.4 NC_004680.1 + 41331 0.66 0.501114
Target:  5'- cGC-CGGCAucaUCGGCCcCGGCcucGCCg -3'
miRNA:   3'- cCGuGCCGU---AGUCGGcGCCGcuuCGG- -5'
18216 5' -59.4 NC_004680.1 + 25634 0.67 0.495118
Target:  5'- uGGCGaacgccuccuugugGGgGUgGGCCGCguGGCGggGUCg -3'
miRNA:   3'- -CCGUg-------------CCgUAgUCGGCG--CCGCuuCGG- -5'
18216 5' -59.4 NC_004680.1 + 35165 0.67 0.491139
Target:  5'- gGGC-CGGCGaaaCAGuuGgGGCGGAGa- -3'
miRNA:   3'- -CCGuGCCGUa--GUCggCgCCGCUUCgg -5'
18216 5' -59.4 NC_004680.1 + 42684 0.67 0.491139
Target:  5'- gGGUugugGGCuUC-GCCGCGGCuGAuGCCg -3'
miRNA:   3'- -CCGug--CCGuAGuCGGCGCCG-CUuCGG- -5'
18216 5' -59.4 NC_004680.1 + 28338 0.67 0.491139
Target:  5'- cGGCGCgGGCGgu-GUCgGCGuCGggGCCg -3'
miRNA:   3'- -CCGUG-CCGUaguCGG-CGCcGCuuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.