miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18217 3' -58.6 NC_004680.1 + 27831 0.66 0.597185
Target:  5'- uGGCcgCagcUCGGCGGCCggacgGUgguggacgcgCUGGGCGc -3'
miRNA:   3'- -CCGuaGa--AGCCGCCGGa----CA----------GGCUCGC- -5'
18217 3' -58.6 NC_004680.1 + 57249 0.66 0.576035
Target:  5'- gGGCGUUcUCGGCGGCg---CCGGGg- -3'
miRNA:   3'- -CCGUAGaAGCCGCCGgacaGGCUCgc -5'
18217 3' -58.6 NC_004680.1 + 46102 0.66 0.576035
Target:  5'- cGGCGgugacggGGCGGCCUuggGUgCGGGCGc -3'
miRNA:   3'- -CCGUagaag--CCGCCGGA---CAgGCUCGC- -5'
18217 3' -58.6 NC_004680.1 + 34176 0.66 0.574982
Target:  5'- aGGCAUCUggaGGCcaugcagGGgCUGUCCGAa-- -3'
miRNA:   3'- -CCGUAGAag-CCG-------CCgGACAGGCUcgc -5'
18217 3' -58.6 NC_004680.1 + 25356 0.67 0.524039
Target:  5'- cGGCGUCaagcUCGGCGGUa-GUCgCGGcGCGu -3'
miRNA:   3'- -CCGUAGa---AGCCGCCGgaCAG-GCU-CGC- -5'
18217 3' -58.6 NC_004680.1 + 3438 0.67 0.513844
Target:  5'- aGCAUCUcuggcuaaGGCGGCCggcgaGUCgUGGGCGu -3'
miRNA:   3'- cCGUAGAag------CCGCCGGa----CAG-GCUCGC- -5'
18217 3' -58.6 NC_004680.1 + 9237 0.67 0.513844
Target:  5'- cGCGUgCUguucgCGGgGGCCgcugGUCUGAGuCGg -3'
miRNA:   3'- cCGUA-GAa----GCCgCCGGa---CAGGCUC-GC- -5'
18217 3' -58.6 NC_004680.1 + 19038 0.67 0.483771
Target:  5'- uGGCGUCUgaGGCGuacgccuaugaGCUUGUCCcgguGGGCGg -3'
miRNA:   3'- -CCGUAGAagCCGC-----------CGGACAGG----CUCGC- -5'
18217 3' -58.6 NC_004680.1 + 37966 0.67 0.483771
Target:  5'- cGCAUCcUCGGCGGCagucaUG-CCG-GUGa -3'
miRNA:   3'- cCGUAGaAGCCGCCGg----ACaGGCuCGC- -5'
18217 3' -58.6 NC_004680.1 + 11516 0.7 0.36476
Target:  5'- cGCAUC-UCGGCGGCCUGaaggucacguUCCGcuuCGa -3'
miRNA:   3'- cCGUAGaAGCCGCCGGAC----------AGGCuc-GC- -5'
18217 3' -58.6 NC_004680.1 + 26543 0.7 0.324688
Target:  5'- aGCgAUCUgUCGGCGaGCg-GUCCGAGCa -3'
miRNA:   3'- cCG-UAGA-AGCCGC-CGgaCAGGCUCGc -5'
18217 3' -58.6 NC_004680.1 + 8654 0.71 0.317077
Target:  5'- cGGCGaaUCgaacUCGGUGGCCUGUUcaCGcGCGg -3'
miRNA:   3'- -CCGU--AGa---AGCCGCCGGACAG--GCuCGC- -5'
18217 3' -58.6 NC_004680.1 + 748 0.71 0.295055
Target:  5'- gGGCAcCgUUUGGCuGGCCgucggcgGUUCGAGCGg -3'
miRNA:   3'- -CCGUaG-AAGCCG-CCGGa------CAGGCUCGC- -5'
18217 3' -58.6 NC_004680.1 + 3707 0.73 0.230272
Target:  5'- -aCAUCUUCGGUGGCaccgguUGUCCaAGCGg -3'
miRNA:   3'- ccGUAGAAGCCGCCGg-----ACAGGcUCGC- -5'
18217 3' -58.6 NC_004680.1 + 43012 1.1 0.00046
Target:  5'- cGGCAUCUUCGGCGGCCUGUCCGAGCGu -3'
miRNA:   3'- -CCGUAGAAGCCGCCGGACAGGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.