miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18217 5' -58.1 NC_004680.1 + 26354 0.66 0.581419
Target:  5'- uCCACgagaugaguccGGUGaGGGCgacacCGCCGAGGAGu -3'
miRNA:   3'- uGGUGa----------CCACgUCCGa----GCGGCUCUUC- -5'
18217 5' -58.1 NC_004680.1 + 12330 0.66 0.570697
Target:  5'- cGCCGCUucgGGUGCcg---CGCCGGGGAGu -3'
miRNA:   3'- -UGGUGA---CCACGuccgaGCGGCUCUUC- -5'
18217 5' -58.1 NC_004680.1 + 45272 0.66 0.560023
Target:  5'- cGCCACguUGGUGUcgucgcGGCgagagcCGCCGAGAc- -3'
miRNA:   3'- -UGGUG--ACCACGu-----CCGa-----GCGGCUCUuc -5'
18217 5' -58.1 NC_004680.1 + 7443 0.66 0.548347
Target:  5'- gGCCACuUGGUGCggcauguGGGC-CGCuaCGAGAu- -3'
miRNA:   3'- -UGGUG-ACCACG-------UCCGaGCG--GCUCUuc -5'
18217 5' -58.1 NC_004680.1 + 51506 0.67 0.497399
Target:  5'- cGCCACUGGUGUAGGa----CGAGGc- -3'
miRNA:   3'- -UGGUGACCACGUCCgagcgGCUCUuc -5'
18217 5' -58.1 NC_004680.1 + 13978 0.67 0.487256
Target:  5'- cCCGCUGcUGguGGCUCcGCUGAucGggGa -3'
miRNA:   3'- uGGUGACcACguCCGAG-CGGCU--CuuC- -5'
18217 5' -58.1 NC_004680.1 + 40828 0.67 0.477211
Target:  5'- uACCACgGuGUGCGGG-UCGCCGAcGGu- -3'
miRNA:   3'- -UGGUGaC-CACGUCCgAGCGGCU-CUuc -5'
18217 5' -58.1 NC_004680.1 + 56467 0.67 0.477211
Target:  5'- cGCCGCUGuUGguGGC--GUCGAGGAGc -3'
miRNA:   3'- -UGGUGACcACguCCGagCGGCUCUUC- -5'
18217 5' -58.1 NC_004680.1 + 24827 0.68 0.457438
Target:  5'- cGCCAaUGGaucUGCGGGaggCGCCGGGGAc -3'
miRNA:   3'- -UGGUgACC---ACGUCCga-GCGGCUCUUc -5'
18217 5' -58.1 NC_004680.1 + 51737 0.7 0.332843
Target:  5'- uGCCGCUGcUGC-GGUUguaGCCGAGggGg -3'
miRNA:   3'- -UGGUGACcACGuCCGAg--CGGCUCuuC- -5'
18217 5' -58.1 NC_004680.1 + 43081 0.71 0.302129
Target:  5'- cCCACUGGUGaaggugugcaaAGGCU-GCgGAGAAGa -3'
miRNA:   3'- uGGUGACCACg----------UCCGAgCGgCUCUUC- -5'
18217 5' -58.1 NC_004680.1 + 3793 0.74 0.185743
Target:  5'- gUCACcGGUGCAGGC-CGUCGAGGu- -3'
miRNA:   3'- uGGUGaCCACGUCCGaGCGGCUCUuc -5'
18217 5' -58.1 NC_004680.1 + 24510 0.76 0.145813
Target:  5'- cCCACUGGUaCGGGCUCGuuGGuGAGGu -3'
miRNA:   3'- uGGUGACCAcGUCCGAGCggCU-CUUC- -5'
18217 5' -58.1 NC_004680.1 + 43047 1.08 0.000566
Target:  5'- gACCACUGGUGCAGGCUCGCCGAGAAGa -3'
miRNA:   3'- -UGGUGACCACGUCCGAGCGGCUCUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.