miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18218 3' -56.9 NC_004680.1 + 50838 0.66 0.68324
Target:  5'- aCCUAuCGCGCcaaGCAcgaUCGCGgUGUUCaGGg -3'
miRNA:   3'- aGGAU-GCGCG---CGU---AGCGUgACAGG-CC- -5'
18218 3' -56.9 NC_004680.1 + 46574 0.66 0.651193
Target:  5'- -aCUugGCGCgGCAgCGgG-UGUCCGGg -3'
miRNA:   3'- agGAugCGCG-CGUaGCgUgACAGGCC- -5'
18218 3' -56.9 NC_004680.1 + 29808 0.66 0.640465
Target:  5'- aCCUGCGCcagguGCGCAUCGCcgaaGgUGUgCGc -3'
miRNA:   3'- aGGAUGCG-----CGCGUAGCG----UgACAgGCc -5'
18218 3' -56.9 NC_004680.1 + 21678 0.67 0.618995
Target:  5'- uUCUggGgGCGCGCuugCGCGCggagcaGUCUGGg -3'
miRNA:   3'- -AGGa-UgCGCGCGua-GCGUGa-----CAGGCC- -5'
18218 3' -56.9 NC_004680.1 + 56304 0.67 0.586894
Target:  5'- aCCUG-GUGCGCAUgGCA---UCCGGg -3'
miRNA:   3'- aGGAUgCGCGCGUAgCGUgacAGGCC- -5'
18218 3' -56.9 NC_004680.1 + 36026 0.68 0.541496
Target:  5'- gCC-ACGCGCGCGUuucgcCGCAuaaaaaacccccgcCUGUCgGGg -3'
miRNA:   3'- aGGaUGCGCGCGUA-----GCGU--------------GACAGgCC- -5'
18218 3' -56.9 NC_004680.1 + 3316 0.69 0.473388
Target:  5'- cCCUcaGC-CGacuGguUCGCGCUGUCCGGc -3'
miRNA:   3'- aGGA--UGcGCg--CguAGCGUGACAGGCC- -5'
18218 3' -56.9 NC_004680.1 + 41035 0.69 0.463584
Target:  5'- aCCUuuGC-CGCAgUCGCGCcaGUCCGGg -3'
miRNA:   3'- aGGAugCGcGCGU-AGCGUGa-CAGGCC- -5'
18218 3' -56.9 NC_004680.1 + 8163 0.71 0.398156
Target:  5'- cUgUACGCGCGC--CGCACU-UCCGGc -3'
miRNA:   3'- aGgAUGCGCGCGuaGCGUGAcAGGCC- -5'
18218 3' -56.9 NC_004680.1 + 11699 0.78 0.142263
Target:  5'- gUCCUugGCGCGCAggGCG-UGUUCGGc -3'
miRNA:   3'- -AGGAugCGCGCGUagCGUgACAGGCC- -5'
18218 3' -56.9 NC_004680.1 + 44207 1.11 0.000582
Target:  5'- gUCCUACGCGCGCAUCGCACUGUCCGGg -3'
miRNA:   3'- -AGGAUGCGCGCGUAGCGUGACAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.