miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18218 5' -53.6 NC_004680.1 + 35259 0.66 0.840576
Target:  5'- cAGaCGGaGAAGAga-ACACCGCGCgaagCGCg -3'
miRNA:   3'- -UC-GCC-CUUUUggaUGUGGCGUGa---GCG- -5'
18218 5' -53.6 NC_004680.1 + 57440 0.66 0.840576
Target:  5'- cAGCGcc---GCCUACaACCGCGC-CGCc -3'
miRNA:   3'- -UCGCccuuuUGGAUG-UGGCGUGaGCG- -5'
18218 5' -53.6 NC_004680.1 + 44731 0.66 0.831659
Target:  5'- uGCGaGGGGucUUUuuGCCGCGCUCGUu -3'
miRNA:   3'- uCGC-CCUUuuGGAugUGGCGUGAGCG- -5'
18218 5' -53.6 NC_004680.1 + 15180 0.66 0.831659
Target:  5'- cAGCGcauGGACCgGCACCGCugaACUgCGCg -3'
miRNA:   3'- -UCGCccuUUUGGaUGUGGCG---UGA-GCG- -5'
18218 5' -53.6 NC_004680.1 + 33751 0.66 0.82253
Target:  5'- uGCGGGAAGACacggGCAUgGgCAUgccCGCa -3'
miRNA:   3'- uCGCCCUUUUGga--UGUGgC-GUGa--GCG- -5'
18218 5' -53.6 NC_004680.1 + 36504 0.66 0.82253
Target:  5'- uGGCGaugacGGAGAuguucGCCgACACCGCucgcaaGCUCGUc -3'
miRNA:   3'- -UCGC-----CCUUU-----UGGaUGUGGCG------UGAGCG- -5'
18218 5' -53.6 NC_004680.1 + 40141 0.66 0.82253
Target:  5'- -cUGGGccGACCUGC-CCGuCACcCGCa -3'
miRNA:   3'- ucGCCCuuUUGGAUGuGGC-GUGaGCG- -5'
18218 5' -53.6 NC_004680.1 + 36855 0.66 0.813198
Target:  5'- cGGUGGGGAAGCUgACcCCGUcuggucaggACUaCGCg -3'
miRNA:   3'- -UCGCCCUUUUGGaUGuGGCG---------UGA-GCG- -5'
18218 5' -53.6 NC_004680.1 + 36936 0.66 0.803674
Target:  5'- cAGaCGGGGucAGCUUcccCACCGCAUaCGCa -3'
miRNA:   3'- -UC-GCCCUu-UUGGAu--GUGGCGUGaGCG- -5'
18218 5' -53.6 NC_004680.1 + 28532 0.66 0.803674
Target:  5'- cGUGGGgcAACCcgaACCGCgaACUCGg -3'
miRNA:   3'- uCGCCCuuUUGGaugUGGCG--UGAGCg -5'
18218 5' -53.6 NC_004680.1 + 5623 0.66 0.803674
Target:  5'- gGGCGGGcaccaucgGGAACCUGCuggGUGCUCGg -3'
miRNA:   3'- -UCGCCC--------UUUUGGAUGuggCGUGAGCg -5'
18218 5' -53.6 NC_004680.1 + 42203 0.66 0.803674
Target:  5'- cAGCuGGGcuGCCacCACCGCACcgUGCa -3'
miRNA:   3'- -UCGcCCUuuUGGauGUGGCGUGa-GCG- -5'
18218 5' -53.6 NC_004680.1 + 3945 0.66 0.803674
Target:  5'- uGGCGGGcaccGACCUGCAacUUGCAaagaCGCa -3'
miRNA:   3'- -UCGCCCuu--UUGGAUGU--GGCGUga--GCG- -5'
18218 5' -53.6 NC_004680.1 + 16775 0.66 0.803674
Target:  5'- cGCGGGcacACCaACACCGaUAC-CGCc -3'
miRNA:   3'- uCGCCCuuuUGGaUGUGGC-GUGaGCG- -5'
18218 5' -53.6 NC_004680.1 + 17252 0.66 0.793969
Target:  5'- uGGCGGGA---CCUGCGgCGggUUCGUc -3'
miRNA:   3'- -UCGCCCUuuuGGAUGUgGCguGAGCG- -5'
18218 5' -53.6 NC_004680.1 + 33574 0.66 0.793969
Target:  5'- cGUGGGGAAcuCCUcgGC-CUGCGCUgGCc -3'
miRNA:   3'- uCGCCCUUUu-GGA--UGuGGCGUGAgCG- -5'
18218 5' -53.6 NC_004680.1 + 40712 0.67 0.774057
Target:  5'- uGGCGGGcaaauAugUUGCGguccauCUGCAUUCGCa -3'
miRNA:   3'- -UCGCCCuu---UugGAUGU------GGCGUGAGCG- -5'
18218 5' -53.6 NC_004680.1 + 12602 0.67 0.763872
Target:  5'- uGGCGGuGcAGGCCggcgGCAUgGCGCUggaCGCg -3'
miRNA:   3'- -UCGCC-CuUUUGGa---UGUGgCGUGA---GCG- -5'
18218 5' -53.6 NC_004680.1 + 56488 0.67 0.743105
Target:  5'- --aGGGGGAACguaauacguCUGCGCCGCugUUGg -3'
miRNA:   3'- ucgCCCUUUUG---------GAUGUGGCGugAGCg -5'
18218 5' -53.6 NC_004680.1 + 42701 0.67 0.742054
Target:  5'- cGGUGGGGugcagucGAACC-GCGuuGCGC-CGCa -3'
miRNA:   3'- -UCGCCCU-------UUUGGaUGUggCGUGaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.