miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18219 5' -55 NC_004680.1 + 43498 0.65 0.807721
Target:  5'- gCGACCUagugcguuGACG-ACGCUGCGcaagGAUCGc -3'
miRNA:   3'- -GCUGGG--------CUGCuUGCGGCGUa---CUAGCu -5'
18219 5' -55 NC_004680.1 + 20011 0.65 0.807721
Target:  5'- cCGAUCCGGUGuugcCGCCGUAUGGgaCGAa -3'
miRNA:   3'- -GCUGGGCUGCuu--GCGGCGUACUa-GCU- -5'
18219 5' -55 NC_004680.1 + 33993 0.65 0.807721
Target:  5'- uGGCgUGGCGuguuccGCGCUGCugggGUGAUCGGu -3'
miRNA:   3'- gCUGgGCUGCu-----UGCGGCG----UACUAGCU- -5'
18219 5' -55 NC_004680.1 + 12774 0.66 0.788744
Target:  5'- gCGACCUGGCcgccguacucGAugGCCcGguUGAUCa- -3'
miRNA:   3'- -GCUGGGCUG----------CUugCGG-CguACUAGcu -5'
18219 5' -55 NC_004680.1 + 4089 0.66 0.779014
Target:  5'- aGACgCGGCGGuagaacuggACGCCGCugcggGUGAaCGAc -3'
miRNA:   3'- gCUGgGCUGCU---------UGCGGCG-----UACUaGCU- -5'
18219 5' -55 NC_004680.1 + 42088 0.66 0.779014
Target:  5'- aGugCCGcCGGGCGCagagguggggCGCAUGAcCGGc -3'
miRNA:   3'- gCugGGCuGCUUGCG----------GCGUACUaGCU- -5'
18219 5' -55 NC_004680.1 + 39865 0.66 0.778033
Target:  5'- -aGCgCCGcagaGAGCGCCGCAUGGagcgccgcacucaUCGAg -3'
miRNA:   3'- gcUG-GGCug--CUUGCGGCGUACU-------------AGCU- -5'
18219 5' -55 NC_004680.1 + 28762 0.66 0.759125
Target:  5'- gGACCCGAUucgcuacuCGCCcaaGUGGUCGAa -3'
miRNA:   3'- gCUGGGCUGcuu-----GCGGcg-UACUAGCU- -5'
18219 5' -55 NC_004680.1 + 37519 0.67 0.748987
Target:  5'- gCGugCgGAUGAugGUCaGC-UGGUCGAu -3'
miRNA:   3'- -GCugGgCUGCUugCGG-CGuACUAGCU- -5'
18219 5' -55 NC_004680.1 + 13847 0.67 0.748987
Target:  5'- uGACCUGugG-GCG-CGCAUGGgccgCGAc -3'
miRNA:   3'- gCUGGGCugCuUGCgGCGUACUa---GCU- -5'
18219 5' -55 NC_004680.1 + 27844 0.67 0.738734
Target:  5'- gCGGCCgGACGGugguggacGCGCUggGCGcGAUCGGc -3'
miRNA:   3'- -GCUGGgCUGCU--------UGCGG--CGUaCUAGCU- -5'
18219 5' -55 NC_004680.1 + 3734 0.67 0.738734
Target:  5'- gCGGCCCaagaguCGAugGCUGcCAUGAcuUCGGu -3'
miRNA:   3'- -GCUGGGcu----GCUugCGGC-GUACU--AGCU- -5'
18219 5' -55 NC_004680.1 + 47931 0.67 0.728378
Target:  5'- gCGACCCGGCcAAcCGCCGCAgccagcCGGc -3'
miRNA:   3'- -GCUGGGCUGcUU-GCGGCGUacua--GCU- -5'
18219 5' -55 NC_004680.1 + 33409 0.67 0.728378
Target:  5'- gCGACCagGAauGugGCCGCcuUGGUCGAc -3'
miRNA:   3'- -GCUGGg-CUgcUugCGGCGu-ACUAGCU- -5'
18219 5' -55 NC_004680.1 + 7090 0.67 0.728378
Target:  5'- cCGACCCGAacuccaCGAgauGCGCCuGCG-GAUCa- -3'
miRNA:   3'- -GCUGGGCU------GCU---UGCGG-CGUaCUAGcu -5'
18219 5' -55 NC_004680.1 + 55855 0.67 0.717929
Target:  5'- gCGGCuUUGGCGAGCGCCGCuugGAcuaGAa -3'
miRNA:   3'- -GCUG-GGCUGCUUGCGGCGua-CUag-CU- -5'
18219 5' -55 NC_004680.1 + 58574 0.68 0.675421
Target:  5'- uGACUgGugGugUGuCUGCGUGGUCGAc -3'
miRNA:   3'- gCUGGgCugCuuGC-GGCGUACUAGCU- -5'
18219 5' -55 NC_004680.1 + 17340 0.69 0.610665
Target:  5'- -cAUCCGACGAAccCGCCGCA-GGUCc- -3'
miRNA:   3'- gcUGGGCUGCUU--GCGGCGUaCUAGcu -5'
18219 5' -55 NC_004680.1 + 49965 0.69 0.610665
Target:  5'- aGGCCC-ACGu-CGCCGCcgaGAUCGAc -3'
miRNA:   3'- gCUGGGcUGCuuGCGGCGua-CUAGCU- -5'
18219 5' -55 NC_004680.1 + 33846 0.69 0.589125
Target:  5'- cCGGCCgaaGACGGACGCUGguUGGcgUGAg -3'
miRNA:   3'- -GCUGGg--CUGCUUGCGGCguACUa-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.