miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18220 3' -59.2 NC_004680.1 + 45876 0.66 0.547484
Target:  5'- --aGUACGCCAgcgaCGguGGUCCgGUGa -3'
miRNA:   3'- ugaCGUGUGGUa---GCguCCGGGgCACc -5'
18220 3' -59.2 NC_004680.1 + 16415 0.66 0.526775
Target:  5'- cCUGCAaaugggggaugGCCguaaGUCGgAGGCCCCGuUGGc -3'
miRNA:   3'- uGACGUg----------UGG----UAGCgUCCGGGGC-ACC- -5'
18220 3' -59.2 NC_004680.1 + 12437 0.66 0.516531
Target:  5'- cGCUGCcCACCAcCGguGGUggcggcggCCCGaUGGc -3'
miRNA:   3'- -UGACGuGUGGUaGCguCCG--------GGGC-ACC- -5'
18220 3' -59.2 NC_004680.1 + 55342 0.67 0.486305
Target:  5'- gGCUGCGCACCAUCaGUGuccCCCCGg-- -3'
miRNA:   3'- -UGACGUGUGGUAG-CGUcc-GGGGCacc -5'
18220 3' -59.2 NC_004680.1 + 27339 0.67 0.466628
Target:  5'- cACU--ACACCAucUCGCAGGCaUCCGaUGGu -3'
miRNA:   3'- -UGAcgUGUGGU--AGCGUCCG-GGGC-ACC- -5'
18220 3' -59.2 NC_004680.1 + 34769 0.67 0.456945
Target:  5'- cGCUGUGCucGCCGUCGUAGGCaUCGUc- -3'
miRNA:   3'- -UGACGUG--UGGUAGCGUCCGgGGCAcc -5'
18220 3' -59.2 NC_004680.1 + 57801 0.68 0.409325
Target:  5'- uGCUGCGgACCAacccgcuUCGUugacGGCCCCGg-- -3'
miRNA:   3'- -UGACGUgUGGU-------AGCGu---CCGGGGCacc -5'
18220 3' -59.2 NC_004680.1 + 15743 0.69 0.334068
Target:  5'- uGCUGCGCACCAcgauugaccuUgGCGGGUCgCUGgGGg -3'
miRNA:   3'- -UGACGUGUGGU----------AgCGUCCGG-GGCaCC- -5'
18220 3' -59.2 NC_004680.1 + 53959 0.7 0.311089
Target:  5'- uGCgGCACACgAg-GCAGGUgcagCCCGUGGa -3'
miRNA:   3'- -UGaCGUGUGgUagCGUCCG----GGGCACC- -5'
18220 3' -59.2 NC_004680.1 + 42773 0.72 0.231248
Target:  5'- gACUGCACcccACCGUCGCcgcGGCaUCCGUGu -3'
miRNA:   3'- -UGACGUG---UGGUAGCGu--CCG-GGGCACc -5'
18220 3' -59.2 NC_004680.1 + 13810 0.74 0.173924
Target:  5'- gGCcGCACACCAcuUCGCGGGUUUCgGUGGu -3'
miRNA:   3'- -UGaCGUGUGGU--AGCGUCCGGGG-CACC- -5'
18220 3' -59.2 NC_004680.1 + 45150 1.09 0.000468
Target:  5'- uACUGCACACCAUCGCAGGCCCCGUGGu -3'
miRNA:   3'- -UGACGUGUGGUAGCGUCCGGGGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.