miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18220 5' -54.5 NC_004680.1 + 56053 0.66 0.793891
Target:  5'- uGCGGCGACGCCGACugcccagacuGcGGCGa---- -3'
miRNA:   3'- gCGCUGCUGUGGUUG----------CaCCGCagauu -5'
18220 5' -54.5 NC_004680.1 + 16786 0.66 0.793891
Target:  5'- gGaCGAccCGACACCGGCGgaaGCGUCg-- -3'
miRNA:   3'- gC-GCU--GCUGUGGUUGCac-CGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 55949 0.66 0.784056
Target:  5'- uGUGACGACGaugguugucgCGGCG-GGCGUCUc- -3'
miRNA:   3'- gCGCUGCUGUg---------GUUGCaCCGCAGAuu -5'
18220 5' -54.5 NC_004680.1 + 6310 0.66 0.78207
Target:  5'- uCGCuGACGGCAgggccguucacCCAGCGgaaugcagagugGGUGUCUGGg -3'
miRNA:   3'- -GCG-CUGCUGU-----------GGUUGCa-----------CCGCAGAUU- -5'
18220 5' -54.5 NC_004680.1 + 46165 0.66 0.774063
Target:  5'- gGUGGuCGGCGagGGCGUGGUGUCg-- -3'
miRNA:   3'- gCGCU-GCUGUggUUGCACCGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 38967 0.66 0.753648
Target:  5'- cCGCGAUgaGGCAgCAGCGUgaGGUGUCc-- -3'
miRNA:   3'- -GCGCUG--CUGUgGUUGCA--CCGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 6557 0.66 0.743248
Target:  5'- -cCGACGAguCACCGACGUGcggauaguGCGUCa-- -3'
miRNA:   3'- gcGCUGCU--GUGGUUGCAC--------CGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 7077 0.66 0.743248
Target:  5'- -uCGGCGGCACCG-CGUauGGCGaCUGAu -3'
miRNA:   3'- gcGCUGCUGUGGUuGCA--CCGCaGAUU- -5'
18220 5' -54.5 NC_004680.1 + 19520 0.67 0.732735
Target:  5'- gGUGACGGCGCCGcCGgUGGUaacaccacguuGUCUAu -3'
miRNA:   3'- gCGCUGCUGUGGUuGC-ACCG-----------CAGAUu -5'
18220 5' -54.5 NC_004680.1 + 24552 0.67 0.71571
Target:  5'- gGUGGCGGCGCCAAaguguuccgcacuuuUGUGccaguaGCGUCUAu -3'
miRNA:   3'- gCGCUGCUGUGGUU---------------GCAC------CGCAGAUu -5'
18220 5' -54.5 NC_004680.1 + 58076 0.68 0.634931
Target:  5'- gGCGACGAUGCCGA--UGGUGUUg-- -3'
miRNA:   3'- gCGCUGCUGUGGUUgcACCGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 28342 0.69 0.612897
Target:  5'- -uCGACGGCGCgGGCGgugucGGCGUCg-- -3'
miRNA:   3'- gcGCUGCUGUGgUUGCa----CCGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 10587 0.69 0.590931
Target:  5'- gGCGACGGCAUCAAagaGGCGUUc-- -3'
miRNA:   3'- gCGCUGCUGUGGUUgcaCCGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 29077 0.69 0.569103
Target:  5'- -cCGGCGGCGCCGcaGUGGUGUCa-- -3'
miRNA:   3'- gcGCUGCUGUGGUugCACCGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 2357 0.7 0.547481
Target:  5'- aCGCGgaacACGuCugCGGCGUGGCGUUc-- -3'
miRNA:   3'- -GCGC----UGCuGugGUUGCACCGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 742 0.7 0.519778
Target:  5'- cCGCGugGGCACCGuuuggcuggccgucgGCGguucgagcgggcUGGCGUCg-- -3'
miRNA:   3'- -GCGCugCUGUGGU---------------UGC------------ACCGCAGauu -5'
18220 5' -54.5 NC_004680.1 + 57766 0.72 0.434652
Target:  5'- aCGaCGACGACGCCAuggagcuaGCGUuccGCGUCUGc -3'
miRNA:   3'- -GC-GCUGCUGUGGU--------UGCAc--CGCAGAUu -5'
18220 5' -54.5 NC_004680.1 + 37164 0.77 0.207182
Target:  5'- cCGCGAgGACGCCAACcUGGCGgCUGc -3'
miRNA:   3'- -GCGCUgCUGUGGUUGcACCGCaGAUu -5'
18220 5' -54.5 NC_004680.1 + 45192 1.06 0.002102
Target:  5'- cCGCGACGACACCAACGUGGCGUCUAAc -3'
miRNA:   3'- -GCGCUGCUGUGGUUGCACCGCAGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.