miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18221 5' -52.2 NC_004680.1 + 54878 0.66 0.901572
Target:  5'- cUGCUCGAaGACGGCuucucugaauguGGGAAaGCUUGCc -3'
miRNA:   3'- -ACGAGCUgCUGCUG------------CCUUUgUGGAUG- -5'
18221 5' -52.2 NC_004680.1 + 47247 0.66 0.894529
Target:  5'- cGUgUCGACGACGAUGGGggguGAguCgUACg -3'
miRNA:   3'- aCG-AGCUGCUGCUGCCU----UUguGgAUG- -5'
18221 5' -52.2 NC_004680.1 + 9598 0.66 0.88572
Target:  5'- cGCgCGAuCGGCGAgaacgucaccaaGGAAGCugCUGCu -3'
miRNA:   3'- aCGaGCU-GCUGCUg-----------CCUUUGugGAUG- -5'
18221 5' -52.2 NC_004680.1 + 43667 0.66 0.879634
Target:  5'- -cCUUGAUGACGcGCGGuguGC-CCUGCa -3'
miRNA:   3'- acGAGCUGCUGC-UGCCuu-UGuGGAUG- -5'
18221 5' -52.2 NC_004680.1 + 44412 0.66 0.879634
Target:  5'- gGgUUGGCGGCuGGCGGGGaguACGgCUGCg -3'
miRNA:   3'- aCgAGCUGCUG-CUGCCUU---UGUgGAUG- -5'
18221 5' -52.2 NC_004680.1 + 4221 0.67 0.863698
Target:  5'- cGCa-GACcGCGGCGGAcGCGCCguugACu -3'
miRNA:   3'- aCGagCUGcUGCUGCCUuUGUGGa---UG- -5'
18221 5' -52.2 NC_004680.1 + 33317 0.67 0.858721
Target:  5'- gUGgUUGugGAUGGCGGcccgguagucguugaGGACGCCgggGCg -3'
miRNA:   3'- -ACgAGCugCUGCUGCC---------------UUUGUGGa--UG- -5'
18221 5' -52.2 NC_004680.1 + 7429 0.67 0.855355
Target:  5'- aGUaUGACGACGACGGc--CACUUGg -3'
miRNA:   3'- aCGaGCUGCUGCUGCCuuuGUGGAUg -5'
18221 5' -52.2 NC_004680.1 + 41636 0.67 0.855355
Target:  5'- cUGCggCGGCGACGAa-GAAAgcCACCUGg -3'
miRNA:   3'- -ACGa-GCUGCUGCUgcCUUU--GUGGAUg -5'
18221 5' -52.2 NC_004680.1 + 30746 0.67 0.846774
Target:  5'- cGCagGGCGACGGCuggcaGGucGCGCaCUACg -3'
miRNA:   3'- aCGagCUGCUGCUG-----CCuuUGUG-GAUG- -5'
18221 5' -52.2 NC_004680.1 + 10915 0.67 0.846774
Target:  5'- aGCcCGACGGCGA-GGAc-CGCCUGu -3'
miRNA:   3'- aCGaGCUGCUGCUgCCUuuGUGGAUg -5'
18221 5' -52.2 NC_004680.1 + 22250 0.67 0.846774
Target:  5'- gGCUCGGCGugaACGACaacccgaaaccgGGAGACugCgcgcGCg -3'
miRNA:   3'- aCGAGCUGC---UGCUG------------CCUUUGugGa---UG- -5'
18221 5' -52.2 NC_004680.1 + 19253 0.67 0.846774
Target:  5'- --aUCGACGACGGCGGGcuauCCgGCg -3'
miRNA:   3'- acgAGCUGCUGCUGCCUuuguGGaUG- -5'
18221 5' -52.2 NC_004680.1 + 53483 0.67 0.828929
Target:  5'- cUGUUCGACGcaguCGGCGGGGAacaaGCCc-- -3'
miRNA:   3'- -ACGAGCUGCu---GCUGCCUUUg---UGGaug -5'
18221 5' -52.2 NC_004680.1 + 7025 0.67 0.828929
Target:  5'- gGgUCGGCGcacaACGACGaGuacGCGCCUGCc -3'
miRNA:   3'- aCgAGCUGC----UGCUGC-Cuu-UGUGGAUG- -5'
18221 5' -52.2 NC_004680.1 + 48090 0.67 0.828014
Target:  5'- cGCUUuggcGCGugGGCGGAugucaugAGCGCCgGCg -3'
miRNA:   3'- aCGAGc---UGCugCUGCCU-------UUGUGGaUG- -5'
18221 5' -52.2 NC_004680.1 + 52879 0.68 0.819684
Target:  5'- aUGCUCGAUG-CGGggcUGGAAacACGCCggACa -3'
miRNA:   3'- -ACGAGCUGCuGCU---GCCUU--UGUGGa-UG- -5'
18221 5' -52.2 NC_004680.1 + 8615 0.68 0.819684
Target:  5'- cGCUU--CGAUGACGGcAGCACCaugACg -3'
miRNA:   3'- aCGAGcuGCUGCUGCCuUUGUGGa--UG- -5'
18221 5' -52.2 NC_004680.1 + 13105 0.68 0.790781
Target:  5'- gGCUCGACGcucACGACGaGucgauCACCUuccACa -3'
miRNA:   3'- aCGAGCUGC---UGCUGC-Cuuu--GUGGA---UG- -5'
18221 5' -52.2 NC_004680.1 + 43147 0.68 0.790781
Target:  5'- cUGCUCGAUGACG-UGccGACGCCa-- -3'
miRNA:   3'- -ACGAGCUGCUGCuGCcuUUGUGGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.