miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18222 5' -62.6 NC_004680.1 + 12704 0.66 0.418666
Target:  5'- -cGGGUGCcaucGCGuCCAG-CGCcauGCCGCCg -3'
miRNA:   3'- ccUCCGCGc---UGC-GGUCuGCG---CGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 4490 0.66 0.418666
Target:  5'- uGGAaccGGCaGuCGAC-CaGGACGCaGCCGCCa -3'
miRNA:   3'- -CCU---CCG-C-GCUGcGgUCUGCG-CGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 28384 0.66 0.418666
Target:  5'- cGGuGGCGUGaACGCaucGAaacccacgGCGCUGCCc -3'
miRNA:   3'- -CCuCCGCGC-UGCGgu-CUg-------CGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 51605 0.66 0.417783
Target:  5'- uGGGcGGCGUG-CGCCuuGGCGauccgcucauccuCGCCGCa -3'
miRNA:   3'- -CCU-CCGCGCuGCGGu-CUGC-------------GCGGCGg -5'
18222 5' -62.6 NC_004680.1 + 17781 0.66 0.417783
Target:  5'- -cAGGCuGCGGCGCaguuGGugaacaucauccuUGCGCCGCUg -3'
miRNA:   3'- ccUCCG-CGCUGCGgu--CU-------------GCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 27448 0.66 0.409884
Target:  5'- ---uGUGCuuCGCCGGGuccCGCGCUGCCu -3'
miRNA:   3'- ccucCGCGcuGCGGUCU---GCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 12615 0.66 0.409884
Target:  5'- cGGcGGCaUGGCGCUGGACGCGaUgGCa -3'
miRNA:   3'- -CCuCCGcGCUGCGGUCUGCGC-GgCGg -5'
18222 5' -62.6 NC_004680.1 + 35149 0.66 0.401218
Target:  5'- uGGGGCGgaGAUuCguGAuCGCGUCGCCa -3'
miRNA:   3'- cCUCCGCg-CUGcGguCU-GCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 10682 0.66 0.401218
Target:  5'- gGGuauuGGCgucgGCGAUGUUguGGGCGCGuUCGCCg -3'
miRNA:   3'- -CCu---CCG----CGCUGCGG--UCUGCGC-GGCGG- -5'
18222 5' -62.6 NC_004680.1 + 21784 0.66 0.401218
Target:  5'- aGGGGCGgGGCuaucCCAGACuGCuCCGCg -3'
miRNA:   3'- cCUCCGCgCUGc---GGUCUG-CGcGGCGg -5'
18222 5' -62.6 NC_004680.1 + 30834 0.66 0.401218
Target:  5'- -uAGuGCGCGACcuGCCAG-C-CGUCGCCc -3'
miRNA:   3'- ccUC-CGCGCUG--CGGUCuGcGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 30502 0.66 0.400357
Target:  5'- cGGuacguGGCGaauguguUGACGUaCAcGAUGCGCCGCUg -3'
miRNA:   3'- -CCu----CCGC-------GCUGCG-GU-CUGCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 33991 0.66 0.392669
Target:  5'- uGuGGCGUGGCGUguucCGCGCUGCUg -3'
miRNA:   3'- cCuCCGCGCUGCGgucuGCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 26824 0.66 0.392669
Target:  5'- uGGuGGUGCccCGCCAacgaccGCGUGCCuGCCa -3'
miRNA:   3'- -CCuCCGCGcuGCGGUc-----UGCGCGG-CGG- -5'
18222 5' -62.6 NC_004680.1 + 24285 0.66 0.392669
Target:  5'- gGGuGGUGCccauccacAUGCCGGuCGCGgUGCCg -3'
miRNA:   3'- -CCuCCGCGc-------UGCGGUCuGCGCgGCGG- -5'
18222 5' -62.6 NC_004680.1 + 11092 0.66 0.384239
Target:  5'- uGGuGGCGgcccCGGCGCCcaagcAGaACGCcGCgGCCg -3'
miRNA:   3'- -CCuCCGC----GCUGCGG-----UC-UGCG-CGgCGG- -5'
18222 5' -62.6 NC_004680.1 + 21995 0.66 0.383403
Target:  5'- uGAGG-GUGACGCCgaacucuuguuucGGAC-CGCCGUa -3'
miRNA:   3'- cCUCCgCGCUGCGG-------------UCUGcGCGGCGg -5'
18222 5' -62.6 NC_004680.1 + 2130 0.66 0.375931
Target:  5'- gGGAGGCGUGuguugaugcGCGUCGugaugguGCGCGuCCGCg -3'
miRNA:   3'- -CCUCCGCGC---------UGCGGUc------UGCGC-GGCGg -5'
18222 5' -62.6 NC_004680.1 + 36018 0.66 0.375931
Target:  5'- --cGGC-CGAgGCCAcGCGCGCguuuCGCCg -3'
miRNA:   3'- ccuCCGcGCUgCGGUcUGCGCG----GCGG- -5'
18222 5' -62.6 NC_004680.1 + 55006 0.66 0.375931
Target:  5'- cGGGcGGCcaggaucauGCGGCGCauGGCuCGCCGCCu -3'
miRNA:   3'- -CCU-CCG---------CGCUGCGguCUGcGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.