miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18222 5' -62.6 NC_004680.1 + 4204 0.66 0.375106
Target:  5'- -aAGGCguucGCGgacaucgcagaccGCGgCGGACGCGCCGUUg -3'
miRNA:   3'- ccUCCG----CGC-------------UGCgGUCUGCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 37912 0.67 0.367744
Target:  5'- --cGGCGUG-CGCCuGGAC-UGUCGCCg -3'
miRNA:   3'- ccuCCGCGCuGCGG-UCUGcGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 2501 0.67 0.359681
Target:  5'- -cGGGCGCGGCGCauuuGGCGgGauaaCCGCa -3'
miRNA:   3'- ccUCCGCGCUGCGgu--CUGCgC----GGCGg -5'
18222 5' -62.6 NC_004680.1 + 857 0.67 0.358881
Target:  5'- cGGAGGCGcCGGuucgGUguGACGgguuugaCGCUGCCg -3'
miRNA:   3'- -CCUCCGC-GCUg---CGguCUGC-------GCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 49451 0.67 0.351742
Target:  5'- uGGAGcGCGCGAaagcaGCacuGGAagGCGuuGCCu -3'
miRNA:   3'- -CCUC-CGCGCUg----CGg--UCUg-CGCggCGG- -5'
18222 5' -62.6 NC_004680.1 + 19839 0.67 0.351742
Target:  5'- cGGAcuGGaaCGACGCCA-ACGCGCCcuuaccGCCg -3'
miRNA:   3'- -CCU--CCgcGCUGCGGUcUGCGCGG------CGG- -5'
18222 5' -62.6 NC_004680.1 + 12450 0.67 0.343928
Target:  5'- cGGuGGUgGCGGCgGCCcGAUG-GCUGCCg -3'
miRNA:   3'- -CCuCCG-CGCUG-CGGuCUGCgCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 36119 0.67 0.343153
Target:  5'- cGGGGGUuuuuuauGCGGCGaaaCGcGCGCGUgGCCu -3'
miRNA:   3'- -CCUCCG-------CGCUGCg--GUcUGCGCGgCGG- -5'
18222 5' -62.6 NC_004680.1 + 17108 0.67 0.3393
Target:  5'- cGAGGCGguguuacugauCGACGCUGGAacauacCgauccccaacacguuGCGCCGCCa -3'
miRNA:   3'- cCUCCGC-----------GCUGCGGUCU------G---------------CGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 11337 0.67 0.33624
Target:  5'- cGGAGaaGCG-UGCC---CGCGCCGCCc -3'
miRNA:   3'- -CCUCcgCGCuGCGGucuGCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 12547 0.67 0.33624
Target:  5'- uGuGGCGCaccGGCaGCCaucGGGC-CGCCGCCa -3'
miRNA:   3'- cCuCCGCG---CUG-CGG---UCUGcGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 43727 0.68 0.321242
Target:  5'- -aGGGCgGCuGCGCCGGcuuuCGCGUCGUCc -3'
miRNA:   3'- ccUCCG-CGcUGCGGUCu---GCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 7179 0.68 0.321242
Target:  5'- uGGAuacucGGCGCuGAaucaguCGCCAuACGCgguGCCGCCg -3'
miRNA:   3'- -CCU-----CCGCG-CU------GCGGUcUGCG---CGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 28246 0.68 0.320505
Target:  5'- uGGAucGGCccCGACGCC-GAcaccgccCGCGCCGUCg -3'
miRNA:   3'- -CCU--CCGc-GCUGCGGuCU-------GCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 59264 0.68 0.314658
Target:  5'- -uGGGCGCGuggcACGCCuugcagagggugcgcAGGuugucgagugugucUGCGCCGCCg -3'
miRNA:   3'- ccUCCGCGC----UGCGG---------------UCU--------------GCGCGGCGG- -5'
18222 5' -62.6 NC_004680.1 + 30292 0.68 0.313933
Target:  5'- cGGGGCGCGAUGga--ACGUGCCGUg -3'
miRNA:   3'- cCUCCGCGCUGCggucUGCGCGGCGg -5'
18222 5' -62.6 NC_004680.1 + 2235 0.68 0.313209
Target:  5'- -cGGGCGCgGACGCgCAccaucacGACGCGCaucaacacaCGCCu -3'
miRNA:   3'- ccUCCGCG-CUGCG-GU-------CUGCGCG---------GCGG- -5'
18222 5' -62.6 NC_004680.1 + 9570 0.68 0.30675
Target:  5'- uGGGGCGCGugGCgGuucGGCuGCugGCCGCg -3'
miRNA:   3'- cCUCCGCGCugCGgU---CUG-CG--CGGCGg -5'
18222 5' -62.6 NC_004680.1 + 5997 0.68 0.306039
Target:  5'- uGAGcGCuGCGGCGCUcGGCaauccaaGCGCCGCa -3'
miRNA:   3'- cCUC-CG-CGCUGCGGuCUG-------CGCGGCGg -5'
18222 5' -62.6 NC_004680.1 + 40686 0.68 0.292764
Target:  5'- cGAGGCGCGGgGCUc--UGCGCaCGUCg -3'
miRNA:   3'- cCUCCGCGCUgCGGucuGCGCG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.