Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18223 | 3' | -53.4 | NC_004680.1 | + | 21621 | 0.66 | 0.835055 |
Target: 5'- cGCUGCAggCGUUcUCGGccGGGGCCGGGg -3' miRNA: 3'- -UGAUGUa-GCAGuGGCCa-CCUUGGCUU- -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 23249 | 0.66 | 0.835055 |
Target: 5'- --aACcUCGUCGCCGGUguuggugcccguGGAGcCCGAc -3' miRNA: 3'- ugaUGuAGCAGUGGCCA------------CCUU-GGCUu -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 13413 | 0.66 | 0.835055 |
Target: 5'- cACgACAUgGggCACUGGUGGGcACCGGu -3' miRNA: 3'- -UGaUGUAgCa-GUGGCCACCU-UGGCUu -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 12471 | 0.67 | 0.766193 |
Target: 5'- gGCUGCcggugCGccacaaagccuguUCACCGGUGG-GCCGAc -3' miRNA: 3'- -UGAUGua---GC-------------AGUGGCCACCuUGGCUu -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 42604 | 0.67 | 0.756869 |
Target: 5'- --gGCGaUGUCGCCGGUGGuccAACCGu- -3' miRNA: 3'- ugaUGUaGCAGUGGCCACC---UUGGCuu -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 6258 | 0.67 | 0.735784 |
Target: 5'- cGCUGCA-CGUCACCuuacGGUGacGCCGGGu -3' miRNA: 3'- -UGAUGUaGCAGUGG----CCACcuUGGCUU- -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 53096 | 0.68 | 0.714271 |
Target: 5'- gGCUGCGUgGaUCGCCGcGUGGGACa--- -3' miRNA: 3'- -UGAUGUAgC-AGUGGC-CACCUUGgcuu -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 14280 | 0.7 | 0.592445 |
Target: 5'- --cGCGUUGUCGCCGGcGGAuaucuuccgcACCGGGg -3' miRNA: 3'- ugaUGUAGCAGUGGCCaCCU----------UGGCUU- -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 17381 | 0.72 | 0.495058 |
Target: 5'- -aUAgAUCGUCGCCGGUGu-ACCGGc -3' miRNA: 3'- ugAUgUAGCAGUGGCCACcuUGGCUu -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 48460 | 0.72 | 0.495058 |
Target: 5'- --aACAUCGUCACCGcgacuccucGUGGAACCc-- -3' miRNA: 3'- ugaUGUAGCAGUGGC---------CACCUUGGcuu -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 49155 | 0.73 | 0.444137 |
Target: 5'- cCUGCAUCGUCACagccuCGGUGGGuUCGGGu -3' miRNA: 3'- uGAUGUAGCAGUG-----GCCACCUuGGCUU- -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 30772 | 0.73 | 0.396292 |
Target: 5'- cACUACGUUgugGUCGCCGGcuUGGAGCgGAu -3' miRNA: 3'- -UGAUGUAG---CAGUGGCC--ACCUUGgCUu -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 17123 | 0.8 | 0.151636 |
Target: 5'- gUUACAcggUCGUCACCGGUgagGGAGCCGAu -3' miRNA: 3'- uGAUGU---AGCAGUGGCCA---CCUUGGCUu -5' |
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18223 | 3' | -53.4 | NC_004680.1 | + | 45871 | 1.05 | 0.00283 |
Target: 5'- cACUACAUCGUCACCGGUGGAACCGAAc -3' miRNA: 3'- -UGAUGUAGCAGUGGCCACCUUGGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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