miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18223 5' -54.9 NC_004680.1 + 56816 0.66 0.782349
Target:  5'- aGCcUgAACcCCACCGgCACCGCCc-- -3'
miRNA:   3'- -CGaAgUUGaGGUGGCaGUGGCGGcag -5'
18223 5' -54.9 NC_004680.1 + 49959 0.66 0.762326
Target:  5'- aUUUCGAggCC-CaCGUCGCCGCCGa- -3'
miRNA:   3'- cGAAGUUgaGGuG-GCAGUGGCGGCag -5'
18223 5' -54.9 NC_004680.1 + 31155 0.66 0.752111
Target:  5'- aGCUgaccCGAC-CCACuCGgCACCGUCGUa -3'
miRNA:   3'- -CGAa---GUUGaGGUG-GCaGUGGCGGCAg -5'
18223 5' -54.9 NC_004680.1 + 3907 0.66 0.741776
Target:  5'- aGCggC-ACUCCguGCCgGUCAgCGCCGUa -3'
miRNA:   3'- -CGaaGuUGAGG--UGG-CAGUgGCGGCAg -5'
18223 5' -54.9 NC_004680.1 + 14424 0.67 0.731331
Target:  5'- -aUUUGACgucugugCCGCCGUCGCCGCa--- -3'
miRNA:   3'- cgAAGUUGa------GGUGGCAGUGGCGgcag -5'
18223 5' -54.9 NC_004680.1 + 12694 0.67 0.710158
Target:  5'- cGCgucCAGCgccaugCCGCCGgccugCACCGCCa-- -3'
miRNA:   3'- -CGaa-GUUGa-----GGUGGCa----GUGGCGGcag -5'
18223 5' -54.9 NC_004680.1 + 16807 0.67 0.699453
Target:  5'- aGCgUCG--UUCACCGagaucaCACCGCCGUCc -3'
miRNA:   3'- -CGaAGUugAGGUGGCa-----GUGGCGGCAG- -5'
18223 5' -54.9 NC_004680.1 + 25620 0.67 0.688683
Target:  5'- cGCccUCGGCauccCCGCCGUCGCCgacGCCG-Ca -3'
miRNA:   3'- -CGa-AGUUGa---GGUGGCAGUGG---CGGCaG- -5'
18223 5' -54.9 NC_004680.1 + 33861 0.67 0.688683
Target:  5'- cGCUggUUGGCgugaggugCCGuuGUUGCCGCCGUUg -3'
miRNA:   3'- -CGA--AGUUGa-------GGUggCAGUGGCGGCAG- -5'
18223 5' -54.9 NC_004680.1 + 46024 0.67 0.688683
Target:  5'- ----aGGCcgCC-CCGUCACCGCCGa- -3'
miRNA:   3'- cgaagUUGa-GGuGGCAGUGGCGGCag -5'
18223 5' -54.9 NC_004680.1 + 26743 0.67 0.67786
Target:  5'- gGCcUCGAUgaacucgCCACCGUCAUUGCCc-- -3'
miRNA:   3'- -CGaAGUUGa------GGUGGCAGUGGCGGcag -5'
18223 5' -54.9 NC_004680.1 + 2693 0.68 0.666993
Target:  5'- --aUCAGCUgUgAUCGUCGCCGuaCCGUCa -3'
miRNA:   3'- cgaAGUUGA-GgUGGCAGUGGC--GGCAG- -5'
18223 5' -54.9 NC_004680.1 + 19348 0.68 0.666993
Target:  5'- cCUUCAACggaucgUgAUgGUCACCGCCGg- -3'
miRNA:   3'- cGAAGUUGa-----GgUGgCAGUGGCGGCag -5'
18223 5' -54.9 NC_004680.1 + 45787 0.68 0.623308
Target:  5'- cGCaUUCAcCggaCCACCGUCGCUGgCGUa -3'
miRNA:   3'- -CG-AAGUuGa--GGUGGCAGUGGCgGCAg -5'
18223 5' -54.9 NC_004680.1 + 23921 0.68 0.623308
Target:  5'- -aUUCAACUCCGCaGUUGaCGCCGUa -3'
miRNA:   3'- cgAAGUUGAGGUGgCAGUgGCGGCAg -5'
18223 5' -54.9 NC_004680.1 + 29144 0.69 0.601473
Target:  5'- gGCUUCGGCgacuagaGCgGUCACUGCCG-Ca -3'
miRNA:   3'- -CGAAGUUGagg----UGgCAGUGGCGGCaG- -5'
18223 5' -54.9 NC_004680.1 + 34441 0.69 0.568934
Target:  5'- uGCUUCAcCUUCGCgGaguguuUCGCCGCCG-Cg -3'
miRNA:   3'- -CGAAGUuGAGGUGgC------AGUGGCGGCaG- -5'
18223 5' -54.9 NC_004680.1 + 2093 0.7 0.547482
Target:  5'- aGCUUCAGCUCaCGCCGcC-CCGCa--- -3'
miRNA:   3'- -CGAAGUUGAG-GUGGCaGuGGCGgcag -5'
18223 5' -54.9 NC_004680.1 + 57417 0.7 0.544285
Target:  5'- cGUUUCAGgUUCGCCGgccggcguggauccUUACCGCgGUCa -3'
miRNA:   3'- -CGAAGUUgAGGUGGC--------------AGUGGCGgCAG- -5'
18223 5' -54.9 NC_004680.1 + 27355 0.7 0.53685
Target:  5'- --cUCGGCggCAgCGUCGCCGCCGcCg -3'
miRNA:   3'- cgaAGUUGagGUgGCAGUGGCGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.