Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18223 | 5' | -54.9 | NC_004680.1 | + | 45908 | 1.04 | 0.002963 |
Target: 5'- -gUUCAACUCCACCGUCACCGCCGUCa -3' miRNA: 3'- cgAAGUUGAGGUGGCAGUGGCGGCAG- -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 56816 | 0.66 | 0.782349 |
Target: 5'- aGCcUgAACcCCACCGgCACCGCCc-- -3' miRNA: 3'- -CGaAgUUGaGGUGGCaGUGGCGGcag -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 49959 | 0.66 | 0.762326 |
Target: 5'- aUUUCGAggCC-CaCGUCGCCGCCGa- -3' miRNA: 3'- cGAAGUUgaGGuG-GCAGUGGCGGCag -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 31155 | 0.66 | 0.752111 |
Target: 5'- aGCUgaccCGAC-CCACuCGgCACCGUCGUa -3' miRNA: 3'- -CGAa---GUUGaGGUG-GCaGUGGCGGCAg -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 3907 | 0.66 | 0.741776 |
Target: 5'- aGCggC-ACUCCguGCCgGUCAgCGCCGUa -3' miRNA: 3'- -CGaaGuUGAGG--UGG-CAGUgGCGGCAg -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 14424 | 0.67 | 0.731331 |
Target: 5'- -aUUUGACgucugugCCGCCGUCGCCGCa--- -3' miRNA: 3'- cgAAGUUGa------GGUGGCAGUGGCGgcag -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 16807 | 0.67 | 0.699453 |
Target: 5'- aGCgUCG--UUCACCGagaucaCACCGCCGUCc -3' miRNA: 3'- -CGaAGUugAGGUGGCa-----GUGGCGGCAG- -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 46024 | 0.67 | 0.688683 |
Target: 5'- ----aGGCcgCC-CCGUCACCGCCGa- -3' miRNA: 3'- cgaagUUGa-GGuGGCAGUGGCGGCag -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 33861 | 0.67 | 0.688683 |
Target: 5'- cGCUggUUGGCgugaggugCCGuuGUUGCCGCCGUUg -3' miRNA: 3'- -CGA--AGUUGa-------GGUggCAGUGGCGGCAG- -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 25620 | 0.67 | 0.688683 |
Target: 5'- cGCccUCGGCauccCCGCCGUCGCCgacGCCG-Ca -3' miRNA: 3'- -CGa-AGUUGa---GGUGGCAGUGG---CGGCaG- -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 41437 | 0.75 | 0.299091 |
Target: 5'- aGCgaacgCGACgCCAUCGUCACCGCCa-- -3' miRNA: 3'- -CGaa---GUUGaGGUGGCAGUGGCGGcag -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 33686 | 0.71 | 0.445139 |
Target: 5'- --cUCuGC-CCgaACCGUCACCGCUGUCc -3' miRNA: 3'- cgaAGuUGaGG--UGGCAGUGGCGGCAG- -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 34441 | 0.69 | 0.568934 |
Target: 5'- uGCUUCAcCUUCGCgGaguguuUCGCCGCCG-Cg -3' miRNA: 3'- -CGAAGUuGAGGUGgC------AGUGGCGGCaG- -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 29144 | 0.69 | 0.601473 |
Target: 5'- gGCUUCGGCgacuagaGCgGUCACUGCCG-Ca -3' miRNA: 3'- -CGAAGUUGagg----UGgCAGUGGCGGCaG- -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 45787 | 0.68 | 0.623308 |
Target: 5'- cGCaUUCAcCggaCCACCGUCGCUGgCGUa -3' miRNA: 3'- -CG-AAGUuGa--GGUGGCAGUGGCgGCAg -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 26743 | 0.67 | 0.67786 |
Target: 5'- gGCcUCGAUgaacucgCCACCGUCAUUGCCc-- -3' miRNA: 3'- -CGaAGUUGa------GGUGGCAGUGGCGGcag -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 16334 | 0.8 | 0.131875 |
Target: 5'- uGCgg-AACUgCACCGUCGCCGUCGUCu -3' miRNA: 3'- -CGaagUUGAgGUGGCAGUGGCGGCAG- -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 2693 | 0.68 | 0.666993 |
Target: 5'- --aUCAGCUgUgAUCGUCGCCGuaCCGUCa -3' miRNA: 3'- cgaAGUUGA-GgUGGCAGUGGC--GGCAG- -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 19348 | 0.68 | 0.666993 |
Target: 5'- cCUUCAACggaucgUgAUgGUCACCGCCGg- -3' miRNA: 3'- cGAAGUUGa-----GgUGgCAGUGGCGGCag -5' |
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18223 | 5' | -54.9 | NC_004680.1 | + | 23921 | 0.68 | 0.623308 |
Target: 5'- -aUUCAACUCCGCaGUUGaCGCCGUa -3' miRNA: 3'- cgAAGUUGAGGUGgCAGUgGCGGCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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