miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18224 5' -62.8 NC_004680.1 + 29118 0.66 0.399893
Target:  5'- aCCCaauCGGugGCgaguaggucaaCCGC-GcCCGCGCCGAGu -3'
miRNA:   3'- -GGG---GCCugUG-----------GGCGaC-GGCGCGGUUC- -5'
18224 5' -62.8 NC_004680.1 + 9314 0.66 0.399893
Target:  5'- cCCCCGcGaacaGCACgCGCcaCCGCGCCAu- -3'
miRNA:   3'- -GGGGC-C----UGUGgGCGacGGCGCGGUuc -5'
18224 5' -62.8 NC_004680.1 + 54276 0.66 0.391328
Target:  5'- gUCCGaGAguuCCUGCUcGCUGCGCCAGa -3'
miRNA:   3'- gGGGC-CUgu-GGGCGA-CGGCGCGGUUc -5'
18224 5' -62.8 NC_004680.1 + 12414 0.66 0.391328
Target:  5'- uCCCCGGcgcgGCACCCGaagcgGCgGuCGCCc-- -3'
miRNA:   3'- -GGGGCC----UGUGGGCga---CGgC-GCGGuuc -5'
18224 5' -62.8 NC_004680.1 + 32216 0.66 0.391328
Target:  5'- uUCCCGGACagaaccACCagcaGCcuugGCCGCGaCCAc- -3'
miRNA:   3'- -GGGGCCUG------UGGg---CGa---CGGCGC-GGUuc -5'
18224 5' -62.8 NC_004680.1 + 50177 0.66 0.390478
Target:  5'- -aCCGGGCcgguccuACCgGCUGCuCGCcgaauugguaGCCGAGg -3'
miRNA:   3'- ggGGCCUG-------UGGgCGACG-GCG----------CGGUUC- -5'
18224 5' -62.8 NC_004680.1 + 39803 0.66 0.382883
Target:  5'- uCCCUGcGGCGCUCuCUGCgGCGCUc-- -3'
miRNA:   3'- -GGGGC-CUGUGGGcGACGgCGCGGuuc -5'
18224 5' -62.8 NC_004680.1 + 5635 0.66 0.382883
Target:  5'- aCCCGGACGaaCGCaGCCagaaCGCCAu- -3'
miRNA:   3'- gGGGCCUGUggGCGaCGGc---GCGGUuc -5'
18224 5' -62.8 NC_004680.1 + 24106 0.66 0.382883
Target:  5'- -aCCGG-CACCCGCUGauCCGacaGgCGAGa -3'
miRNA:   3'- ggGGCCuGUGGGCGAC--GGCg--CgGUUC- -5'
18224 5' -62.8 NC_004680.1 + 39731 0.66 0.382883
Target:  5'- uCCCUGcGGCGCUCcCUGCgGCGCUc-- -3'
miRNA:   3'- -GGGGC-CUGUGGGcGACGgCGCGGuuc -5'
18224 5' -62.8 NC_004680.1 + 39887 0.66 0.382883
Target:  5'- uCCCUGcGGCGCUCcCUGCgGCGCUc-- -3'
miRNA:   3'- -GGGGC-CUGUGGGcGACGgCGCGGuuc -5'
18224 5' -62.8 NC_004680.1 + 19382 0.66 0.374561
Target:  5'- -aCCGGGaACaCCGUgGCCGCgguGCCAAGg -3'
miRNA:   3'- ggGGCCUgUG-GGCGaCGGCG---CGGUUC- -5'
18224 5' -62.8 NC_004680.1 + 56227 0.66 0.366362
Target:  5'- -aCUGGACgACCC-CaGCCGCGUCGAa -3'
miRNA:   3'- ggGGCCUG-UGGGcGaCGGCGCGGUUc -5'
18224 5' -62.8 NC_004680.1 + 11154 0.66 0.365549
Target:  5'- gCCCUgcgGGugACCCGauucugccgccucCUGgCGCGUCGGGg -3'
miRNA:   3'- -GGGG---CCugUGGGC-------------GACgGCGCGGUUC- -5'
18224 5' -62.8 NC_004680.1 + 29201 0.66 0.358288
Target:  5'- uUCCgGGGUugCCGCggcguuCCGCGCCGAu -3'
miRNA:   3'- -GGGgCCUGugGGCGac----GGCGCGGUUc -5'
18224 5' -62.8 NC_004680.1 + 12305 0.67 0.342516
Target:  5'- gCCaCCGGAacCGCUcgcggggaaCGCUGCCGCGgaCGGGg -3'
miRNA:   3'- -GG-GGCCU--GUGG---------GCGACGGCGCg-GUUC- -5'
18224 5' -62.8 NC_004680.1 + 40102 0.67 0.332536
Target:  5'- cUCCUGGcgugggggugACgGCCCGCUGCgucagccguagaucCGCGCCAGa -3'
miRNA:   3'- -GGGGCC----------UG-UGGGCGACG--------------GCGCGGUUc -5'
18224 5' -62.8 NC_004680.1 + 10674 0.67 0.31981
Target:  5'- aUCCCGGaACGCCUcuuugaUGCCGuCGCCGu- -3'
miRNA:   3'- -GGGGCC-UGUGGGcg----ACGGC-GCGGUuc -5'
18224 5' -62.8 NC_004680.1 + 12732 0.67 0.31981
Target:  5'- aCCCCGGuCugCgCGgcCUGaCCaGCGCCGGGu -3'
miRNA:   3'- -GGGGCCuGugG-GC--GAC-GG-CGCGGUUC- -5'
18224 5' -62.8 NC_004680.1 + 3081 0.67 0.312497
Target:  5'- gCUCCGacgacuucaACGCCCGCUGCCGgaaagccugaauCGCCAu- -3'
miRNA:   3'- -GGGGCc--------UGUGGGCGACGGC------------GCGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.