miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18227 5' -54.5 NC_004680.1 + 12983 0.68 0.692034
Target:  5'- uGUCGCCcUGCUUGGgcuggaccuggcCUugGGCGGcGGCu -3'
miRNA:   3'- -CAGUGGcGCGAACU------------GAugCUGCU-CCG- -5'
18227 5' -54.5 NC_004680.1 + 52267 0.68 0.670309
Target:  5'- cUUGCCgGCGCagcuCUGCGGCGAGGg -3'
miRNA:   3'- cAGUGG-CGCGaacuGAUGCUGCUCCg -5'
18227 5' -54.5 NC_004680.1 + 58426 0.68 0.670309
Target:  5'- aUgGCUGUGCc-GACUGCGugGAguaGGCg -3'
miRNA:   3'- cAgUGGCGCGaaCUGAUGCugCU---CCG- -5'
18227 5' -54.5 NC_004680.1 + 18033 0.68 0.659389
Target:  5'- aUCGCCGCuGCgaGAaUGCGACG-GGUc -3'
miRNA:   3'- cAGUGGCG-CGaaCUgAUGCUGCuCCG- -5'
18227 5' -54.5 NC_004680.1 + 52303 0.68 0.659389
Target:  5'- --gGCCGCGUUcGAC-ACGcucauCGAGGCa -3'
miRNA:   3'- cagUGGCGCGAaCUGaUGCu----GCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 14540 0.68 0.636385
Target:  5'- uUCACCGC-CUguugGAagauguucagcucCUGCGGCGAcGGCg -3'
miRNA:   3'- cAGUGGCGcGAa---CU-------------GAUGCUGCU-CCG- -5'
18227 5' -54.5 NC_004680.1 + 25432 0.69 0.615555
Target:  5'- -cCGCCGaGCUUGACgccgaacugGCGgcccucgucuACGAGGCg -3'
miRNA:   3'- caGUGGCgCGAACUGa--------UGC----------UGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 34781 0.7 0.561145
Target:  5'- gGUCACCGCGCUcgcUGuGCUcgcCGuCGuAGGCa -3'
miRNA:   3'- -CAGUGGCGCGA---AC-UGAu--GCuGC-UCCG- -5'
18227 5' -54.5 NC_004680.1 + 59282 0.71 0.508132
Target:  5'- -gCGCCucgGCGCggGACUugGGCGcguGGCa -3'
miRNA:   3'- caGUGG---CGCGaaCUGAugCUGCu--CCG- -5'
18227 5' -54.5 NC_004680.1 + 37878 0.71 0.508132
Target:  5'- gGUCACCG-GCaUGACUGCcGcCGAGGa -3'
miRNA:   3'- -CAGUGGCgCGaACUGAUG-CuGCUCCg -5'
18227 5' -54.5 NC_004680.1 + 47841 0.71 0.508132
Target:  5'- -gCGCCG-GC-UGGCUGCGGCGGuuGGCc -3'
miRNA:   3'- caGUGGCgCGaACUGAUGCUGCU--CCG- -5'
18227 5' -54.5 NC_004680.1 + 29759 0.71 0.497775
Target:  5'- cGUCGCCGCGUUUcgcgGACUcCaACGAGGa -3'
miRNA:   3'- -CAGUGGCGCGAA----CUGAuGcUGCUCCg -5'
18227 5' -54.5 NC_004680.1 + 33503 0.71 0.477352
Target:  5'- -aCACCGCGUUccagGugUGCGACGAaccagaugcGGUg -3'
miRNA:   3'- caGUGGCGCGAa---CugAUGCUGCU---------CCG- -5'
18227 5' -54.5 NC_004680.1 + 50126 0.71 0.477352
Target:  5'- --gGCUGCGCUggccGACUACGAaGuGGCg -3'
miRNA:   3'- cagUGGCGCGAa---CUGAUGCUgCuCCG- -5'
18227 5' -54.5 NC_004680.1 + 25727 0.72 0.447522
Target:  5'- uGUCGCaGUGUUUGGgUGCGGCGucGGCg -3'
miRNA:   3'- -CAGUGgCGCGAACUgAUGCUGCu-CCG- -5'
18227 5' -54.5 NC_004680.1 + 36935 0.74 0.339601
Target:  5'- aGUUGCCGCGCga-ACUGCGAUGcGGUg -3'
miRNA:   3'- -CAGUGGCGCGaacUGAUGCUGCuCCG- -5'
18227 5' -54.5 NC_004680.1 + 49389 0.76 0.265056
Target:  5'- -gCGCCGuUGCUUGGCUGCGAUu-GGCg -3'
miRNA:   3'- caGUGGC-GCGAACUGAUGCUGcuCCG- -5'
18227 5' -54.5 NC_004680.1 + 48987 1.13 0.000793
Target:  5'- aGUCACCGCGCUUGACUACGACGAGGCa -3'
miRNA:   3'- -CAGUGGCGCGAACUGAUGCUGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.