miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18228 5' -54 NC_004680.1 + 27540 0.66 0.784128
Target:  5'- --cCGCGCcaggCAGCGCGggacccGGCGAAGc -3'
miRNA:   3'- cuuGCGCGa---GUUGCGCgaa---CCGCUUC- -5'
18228 5' -54 NC_004680.1 + 40523 0.66 0.784128
Target:  5'- cGugGgGCUCugcACGCGUcgUGGCGuGGg -3'
miRNA:   3'- cUugCgCGAGu--UGCGCGa-ACCGCuUC- -5'
18228 5' -54 NC_004680.1 + 42238 0.66 0.76382
Target:  5'- --cCGCGCgaaGACGgGUgUGGCGAAa -3'
miRNA:   3'- cuuGCGCGag-UUGCgCGaACCGCUUc -5'
18228 5' -54 NC_004680.1 + 9516 0.66 0.76382
Target:  5'- uGAGCGUGCU--GCuGCGgUggcGGCGAAGa -3'
miRNA:   3'- -CUUGCGCGAguUG-CGCgAa--CCGCUUC- -5'
18228 5' -54 NC_004680.1 + 26047 0.66 0.76382
Target:  5'- ---gGCGgUCuACGCGCUaggGGCGAu- -3'
miRNA:   3'- cuugCGCgAGuUGCGCGAa--CCGCUuc -5'
18228 5' -54 NC_004680.1 + 45225 0.67 0.753454
Target:  5'- --gUGgGCUUGugGCGCUUgucaucguugGGCGGAGu -3'
miRNA:   3'- cuuGCgCGAGUugCGCGAA----------CCGCUUC- -5'
18228 5' -54 NC_004680.1 + 12621 0.67 0.742961
Target:  5'- cAugGCGCUgGACGCGa-UGGCa--- -3'
miRNA:   3'- cUugCGCGAgUUGCGCgaACCGcuuc -5'
18228 5' -54 NC_004680.1 + 52453 0.67 0.732354
Target:  5'- cGAGCGaaCUCGAUGUGUUcGGUGggGg -3'
miRNA:   3'- -CUUGCgcGAGUUGCGCGAaCCGCuuC- -5'
18228 5' -54 NC_004680.1 + 36790 0.67 0.710844
Target:  5'- uGAUGCGCUCAA-GCGCgggUUGGCu--- -3'
miRNA:   3'- cUUGCGCGAGUUgCGCG---AACCGcuuc -5'
18228 5' -54 NC_004680.1 + 56889 0.68 0.689018
Target:  5'- cGGugGgGUUCAggcugaggGCGUGCUgcagGGUGGAGg -3'
miRNA:   3'- -CUugCgCGAGU--------UGCGCGAa---CCGCUUC- -5'
18228 5' -54 NC_004680.1 + 30669 0.68 0.678016
Target:  5'- gGGACGCGCUCAaaACGUGggUGcgacuGUGAGGc -3'
miRNA:   3'- -CUUGCGCGAGU--UGCGCgaAC-----CGCUUC- -5'
18228 5' -54 NC_004680.1 + 39098 0.68 0.678016
Target:  5'- -cACGUGU--AGCGCGCUUcGGCGAu- -3'
miRNA:   3'- cuUGCGCGagUUGCGCGAA-CCGCUuc -5'
18228 5' -54 NC_004680.1 + 49715 0.68 0.644787
Target:  5'- cGGCGaccaGCUCGggcacgagaguGCGCGCUUgGGCGAc- -3'
miRNA:   3'- cUUGCg---CGAGU-----------UGCGCGAA-CCGCUuc -5'
18228 5' -54 NC_004680.1 + 20813 0.69 0.622557
Target:  5'- cGACGCuGC-CGGCGCGUU-GGCGAc- -3'
miRNA:   3'- cUUGCG-CGaGUUGCGCGAaCCGCUuc -5'
18228 5' -54 NC_004680.1 + 45616 0.69 0.61145
Target:  5'- cGAAUGCGagggCGGCGCGUcUGGCGucGc -3'
miRNA:   3'- -CUUGCGCga--GUUGCGCGaACCGCuuC- -5'
18228 5' -54 NC_004680.1 + 49704 0.69 0.600362
Target:  5'- uGAGCGUGCggcugaaguACGCGCUUGGUccGAAc -3'
miRNA:   3'- -CUUGCGCGagu------UGCGCGAACCG--CUUc -5'
18228 5' -54 NC_004680.1 + 29057 0.7 0.523997
Target:  5'- cGAACGUGCgggCcGCGCGUUcGGCGGc- -3'
miRNA:   3'- -CUUGCGCGa--GuUGCGCGAaCCGCUuc -5'
18228 5' -54 NC_004680.1 + 37973 0.72 0.451629
Target:  5'- cGAACGgGCUCGG-GCGCUagccgagaauuUGGCGAc- -3'
miRNA:   3'- -CUUGCgCGAGUUgCGCGA-----------ACCGCUuc -5'
18228 5' -54 NC_004680.1 + 40571 0.72 0.431963
Target:  5'- cGugGgGCUCuGCGCGCgucgUGGCGuGGg -3'
miRNA:   3'- cUugCgCGAGuUGCGCGa---ACCGCuUC- -5'
18228 5' -54 NC_004680.1 + 10705 0.72 0.422319
Target:  5'- uGGGCGCGUUCGcCGCGUggaaGGCGAu- -3'
miRNA:   3'- -CUUGCGCGAGUuGCGCGaa--CCGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.