miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18231 5' -52.6 NC_004680.1 + 42650 0.66 0.84253
Target:  5'- aGGCGGcccgccUGC-UCGACGACGGCg---- -3'
miRNA:   3'- -CCGCCu-----AUGcAGCUGCUGUCGauguu -5'
18231 5' -52.6 NC_004680.1 + 17264 0.67 0.818838
Target:  5'- cGGCGGGUuCGUCGGauggguuugaucgugUGGCGGCcggUACAc -3'
miRNA:   3'- -CCGCCUAuGCAGCU---------------GCUGUCG---AUGUu -5'
18231 5' -52.6 NC_004680.1 + 27376 0.67 0.805504
Target:  5'- cGGUGGucgauUGCGUCGAcacCGACcguGCUGCc- -3'
miRNA:   3'- -CCGCCu----AUGCAGCU---GCUGu--CGAUGuu -5'
18231 5' -52.6 NC_004680.1 + 40853 0.68 0.77574
Target:  5'- cGGCGGucAUGUCGAUGACuGCa---- -3'
miRNA:   3'- -CCGCCuaUGCAGCUGCUGuCGauguu -5'
18231 5' -52.6 NC_004680.1 + 44468 0.68 0.77574
Target:  5'- -cUGGAUGggUGUCGACGGCAuGCUugAGc -3'
miRNA:   3'- ccGCCUAU--GCAGCUGCUGU-CGAugUU- -5'
18231 5' -52.6 NC_004680.1 + 30739 0.68 0.77574
Target:  5'- -uUGGAUGCGcagGGCGACGGCUgGCAGg -3'
miRNA:   3'- ccGCCUAUGCag-CUGCUGUCGA-UGUU- -5'
18231 5' -52.6 NC_004680.1 + 23121 0.68 0.772683
Target:  5'- uGGUGGAUaugcgcgggagcagACGUCGugGACgucgGGCUccACGGg -3'
miRNA:   3'- -CCGCCUA--------------UGCAGCugCUG----UCGA--UGUU- -5'
18231 5' -52.6 NC_004680.1 + 35640 0.69 0.733975
Target:  5'- uGCGGcgAUGUCGACGuuugccCAGCUAgAc -3'
miRNA:   3'- cCGCCuaUGCAGCUGCu-----GUCGAUgUu -5'
18231 5' -52.6 NC_004680.1 + 18848 0.69 0.733975
Target:  5'- gGGCGuGG--UGUCGugGAuCGGCUACGg -3'
miRNA:   3'- -CCGC-CUauGCAGCugCU-GUCGAUGUu -5'
18231 5' -52.6 NC_004680.1 + 43499 0.69 0.712414
Target:  5'- cGCGaccuaGUGCGUUGACGAC-GCUGCGc -3'
miRNA:   3'- cCGCc----UAUGCAGCUGCUGuCGAUGUu -5'
18231 5' -52.6 NC_004680.1 + 41296 0.7 0.635002
Target:  5'- uGGCGGuAUugGUgGACGAUgccGCUGCu- -3'
miRNA:   3'- -CCGCC-UAugCAgCUGCUGu--CGAUGuu -5'
18231 5' -52.6 NC_004680.1 + 25697 0.71 0.590461
Target:  5'- cGGCGGGgaugcCGagGGCGAguGCUGCGGu -3'
miRNA:   3'- -CCGCCUau---GCagCUGCUguCGAUGUU- -5'
18231 5' -52.6 NC_004680.1 + 3274 0.74 0.432455
Target:  5'- aGCGGAgucUugGUcgcCGACGACAGCUGuCGAa -3'
miRNA:   3'- cCGCCU---AugCA---GCUGCUGUCGAU-GUU- -5'
18231 5' -52.6 NC_004680.1 + 52222 1.08 0.002267
Target:  5'- aGGCGGAUACGUCGACGACAGCUACAAc -3'
miRNA:   3'- -CCGCCUAUGCAGCUGCUGUCGAUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.