Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18232 | 3' | -48.5 | NC_004680.1 | + | 5818 | 0.66 | 0.977686 |
Target: 5'- --aGGUUGU--UCGCCCGACUGgUGu -3' miRNA: 3'- caaCUAGCGauAGCGGGUUGAUgAUc -5' |
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18232 | 3' | -48.5 | NC_004680.1 | + | 58348 | 0.66 | 0.96857 |
Target: 5'- uGUUGGuauUCGCggggccguucUCGCCCGagguagagggagACUACUGGg -3' miRNA: 3'- -CAACU---AGCGau--------AGCGGGU------------UGAUGAUC- -5' |
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18232 | 3' | -48.5 | NC_004680.1 | + | 13001 | 0.68 | 0.942998 |
Target: 5'- uGUUGAcCGUgauauucgUGUCGCCCuGCUuggGCUGGa -3' miRNA: 3'- -CAACUaGCG--------AUAGCGGGuUGA---UGAUC- -5' |
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18232 | 3' | -48.5 | NC_004680.1 | + | 41502 | 0.68 | 0.926215 |
Target: 5'- --aGGUC-CUAUCGCCCAACagauCUAc -3' miRNA: 3'- caaCUAGcGAUAGCGGGUUGau--GAUc -5' |
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18232 | 3' | -48.5 | NC_004680.1 | + | 52557 | 0.69 | 0.899571 |
Target: 5'- -gUGuUCGUUGUCGCUC-AUUGCUGGu -3' miRNA: 3'- caACuAGCGAUAGCGGGuUGAUGAUC- -5' |
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18232 | 3' | -48.5 | NC_004680.1 | + | 16638 | 0.71 | 0.832504 |
Target: 5'- --aGAUUcCUGUCGaUCCGACUGCUGGc -3' miRNA: 3'- caaCUAGcGAUAGC-GGGUUGAUGAUC- -5' |
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18232 | 3' | -48.5 | NC_004680.1 | + | 52439 | 1.09 | 0.004958 |
Target: 5'- cGUUGAUCGCUAUCGCCCAACUACUAGc -3' miRNA: 3'- -CAACUAGCGAUAGCGGGUUGAUGAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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