Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18232 | 5' | -50 | NC_004680.1 | + | 46246 | 0.68 | 0.874404 |
Target: 5'- aGGCCGGUcugugugaGGUGuGCGGCGgaaACGGAUGCg -3' miRNA: 3'- -CUGGUCG--------UUACuCGCUGU---UGCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 23770 | 0.68 | 0.871952 |
Target: 5'- cGACCAcGUuuUGGccgaugucaccgauGUGACGGCGAGCGCu -3' miRNA: 3'- -CUGGU-CGuuACU--------------CGCUGUUGCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 39688 | 0.68 | 0.866136 |
Target: 5'- -nCC-GCAggGAGCGccGCAugGAGCGCc -3' miRNA: 3'- cuGGuCGUuaCUCGC--UGUugCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 3455 | 0.68 | 0.866136 |
Target: 5'- cGGCCGGCGagucGUGGGCGucuaucCGGCgGAACAUc -3' miRNA: 3'- -CUGGUCGU----UACUCGCu-----GUUG-CUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 8085 | 0.69 | 0.848814 |
Target: 5'- gGAUCAGCAGUaccGAGCG-CcACGAAcCGCa -3' miRNA: 3'- -CUGGUCGUUA---CUCGCuGuUGCUU-GUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 12447 | 0.69 | 0.830503 |
Target: 5'- cACCGGUggUG-GCGGCGGCccGAugGCu -3' miRNA: 3'- cUGGUCGuuACuCGCUGUUG--CUugUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 39807 | 0.69 | 0.830503 |
Target: 5'- cGCC-GCAggGAGCGccGCAGgGAGCGCc -3' miRNA: 3'- cUGGuCGUuaCUCGC--UGUUgCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 55872 | 0.69 | 0.811285 |
Target: 5'- cGGCCAucGCGA-GGGUGGCGgcuuugGCGAGCGCc -3' miRNA: 3'- -CUGGU--CGUUaCUCGCUGU------UGCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 34549 | 0.69 | 0.811285 |
Target: 5'- -gUCAGCAucgccGAcuaccGCGGCGGCGAACACu -3' miRNA: 3'- cuGGUCGUua---CU-----CGCUGUUGCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 42977 | 0.7 | 0.80036 |
Target: 5'- uGCCuuCAGUGGGCGcuggacaACAACGAACAg -3' miRNA: 3'- cUGGucGUUACUCGC-------UGUUGCUUGUg -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 4164 | 0.7 | 0.780953 |
Target: 5'- aAUCAGCAcgGAGCuucuCAACGAAaCGCa -3' miRNA: 3'- cUGGUCGUuaCUCGcu--GUUGCUU-GUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 19696 | 0.7 | 0.780953 |
Target: 5'- aGACCAGaaggucAUGGGCGGCcACGGuACGCc -3' miRNA: 3'- -CUGGUCgu----UACUCGCUGuUGCU-UGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 30804 | 0.7 | 0.759872 |
Target: 5'- cACCGGCGAccggauggacuUGGguGCGACGACGAucauCACa -3' miRNA: 3'- cUGGUCGUU-----------ACU--CGCUGUUGCUu---GUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 39867 | 0.71 | 0.738222 |
Target: 5'- cGCC-GCAGaGAGCGccGCAugGAGCGCc -3' miRNA: 3'- cUGGuCGUUaCUCGC--UGUugCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 29167 | 0.71 | 0.737126 |
Target: 5'- cAUCAGCAGUGAcaccacuGCGGCGccgcCGGACACu -3' miRNA: 3'- cUGGUCGUUACU-------CGCUGUu---GCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 12308 | 0.71 | 0.727216 |
Target: 5'- cGACCAGUg--GGGCGGgGGCGAcCGCc -3' miRNA: 3'- -CUGGUCGuuaCUCGCUgUUGCUuGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 57339 | 0.71 | 0.716106 |
Target: 5'- cGGCCGGCGAaccUGAaacGCGuCAcCGAACACu -3' miRNA: 3'- -CUGGUCGUU---ACU---CGCuGUuGCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 34651 | 0.71 | 0.701531 |
Target: 5'- -cCCGGCGAcggcacccacaacaUGGGCGGCGcagACGGAUACg -3' miRNA: 3'- cuGGUCGUU--------------ACUCGCUGU---UGCUUGUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 7619 | 0.72 | 0.69363 |
Target: 5'- uGACCGGCAccgacugGAGCGcCGGCGGAuuCACu -3' miRNA: 3'- -CUGGUCGUua-----CUCGCuGUUGCUU--GUG- -5' |
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18232 | 5' | -50 | NC_004680.1 | + | 41418 | 0.72 | 0.69363 |
Target: 5'- ---aGGCAucaccgGAGuCGACAGCGAACGCg -3' miRNA: 3'- cuggUCGUua----CUC-GCUGUUGCUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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