miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18233 3' -47 NC_004680.1 + 3003 0.66 0.993029
Target:  5'- gGCgUUGAAGUCGUCGgagcauagauuGCCGAAG-GUu -3'
miRNA:   3'- gUGaAACUUCGGUAGC-----------UGGUUUCaCG- -5'
18233 3' -47 NC_004680.1 + 39114 0.66 0.991859
Target:  5'- uGCUUUGGAGUg--CGGCCAc-GUGUa -3'
miRNA:   3'- gUGAAACUUCGguaGCUGGUuuCACG- -5'
18233 3' -47 NC_004680.1 + 34569 0.66 0.989057
Target:  5'- cCAUguugUGGGuGCCGUCG-CCGGggauGGUGCg -3'
miRNA:   3'- -GUGaa--ACUU-CGGUAGCuGGUU----UCACG- -5'
18233 3' -47 NC_004680.1 + 44860 0.67 0.985555
Target:  5'- gCACaac--AGCC-UUGGCCAGAGUGUg -3'
miRNA:   3'- -GUGaaacuUCGGuAGCUGGUUUCACG- -5'
18233 3' -47 NC_004680.1 + 10661 0.67 0.983511
Target:  5'- -uCUUUGAuGCCGUCG-CCGuGG-GCa -3'
miRNA:   3'- guGAAACUuCGGUAGCuGGUuUCaCG- -5'
18233 3' -47 NC_004680.1 + 26884 0.67 0.978776
Target:  5'- cCACUUgc-GGUCAUCG-CCGAugccGGUGCc -3'
miRNA:   3'- -GUGAAacuUCGGUAGCuGGUU----UCACG- -5'
18233 3' -47 NC_004680.1 + 36997 0.67 0.978253
Target:  5'- aACUgcagGGAGCCAUUGGCCucgacguacuuGGUGa -3'
miRNA:   3'- gUGAaa--CUUCGGUAGCUGGuu---------UCACg -5'
18233 3' -47 NC_004680.1 + 25279 0.68 0.976062
Target:  5'- aAUUUUGAGGgCG-CGGCCGAugucGUGCc -3'
miRNA:   3'- gUGAAACUUCgGUaGCUGGUUu---CACG- -5'
18233 3' -47 NC_004680.1 + 17821 0.68 0.962649
Target:  5'- gGCUgUUGAAGUCgAUCGACUggaaGAAGUuGCg -3'
miRNA:   3'- gUGA-AACUUCGG-UAGCUGG----UUUCA-CG- -5'
18233 3' -47 NC_004680.1 + 53730 0.69 0.958611
Target:  5'- ----gUGAGGaCAUCGACCGGuuguucaaacccGGUGCa -3'
miRNA:   3'- gugaaACUUCgGUAGCUGGUU------------UCACG- -5'
18233 3' -47 NC_004680.1 + 30859 0.69 0.954282
Target:  5'- cCGCUcc-AAGCCggCGACCAcaacguAGUGCg -3'
miRNA:   3'- -GUGAaacUUCGGuaGCUGGUu-----UCACG- -5'
18233 3' -47 NC_004680.1 + 52565 1.12 0.004605
Target:  5'- cCACUUUGAAGCCAUCGACCAAAGUGCc -3'
miRNA:   3'- -GUGAAACUUCGGUAGCUGGUUUCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.