miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18234 5' -56.1 NC_004680.1 + 16370 0.66 0.667454
Target:  5'- cGAGAACGugaUGUGGCGGguuaCC-CAGGAUg -3'
miRNA:   3'- -UUCUUGUua-GCACCGCC----GGcGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 50809 0.66 0.634304
Target:  5'- cGGGugGAuUCGUaccaGGCCGCAGGAUg -3'
miRNA:   3'- uUCUugUU-AGCAccg-CCGGCGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 35362 0.66 0.623237
Target:  5'- -cGAGCAuUCGaaGCGuugaGCCGCGGGGCc -3'
miRNA:   3'- uuCUUGUuAGCacCGC----CGGCGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 11862 0.67 0.612177
Target:  5'- gGAGAGCGGUCaUGGacacacCGGCCGCAccGGCa -3'
miRNA:   3'- -UUCUUGUUAGcACC------GCCGGCGUc-CUG- -5'
18234 5' -56.1 NC_004680.1 + 54761 0.67 0.601134
Target:  5'- -uGAGgGAUCGUGGUguGGCgaaGguGGGCa -3'
miRNA:   3'- uuCUUgUUAGCACCG--CCGg--CguCCUG- -5'
18234 5' -56.1 NC_004680.1 + 51127 0.67 0.579139
Target:  5'- cGGAACGGauuUCGac-CGGCUGCGGGGCa -3'
miRNA:   3'- uUCUUGUU---AGCaccGCCGGCGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 27506 0.67 0.572572
Target:  5'- ---cGCGAUCGacgucgccgcauaucUGGCGG-UGCAGGACg -3'
miRNA:   3'- uucuUGUUAGC---------------ACCGCCgGCGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 57383 0.67 0.557321
Target:  5'- -cGGACAacaaguccucGUCGUGGacgaCGGCCGCAcuGGAa -3'
miRNA:   3'- uuCUUGU----------UAGCACC----GCCGGCGU--CCUg -5'
18234 5' -56.1 NC_004680.1 + 11259 0.68 0.546499
Target:  5'- cGGGGAU--UCcUGGCauGCCGCAGGACg -3'
miRNA:   3'- -UUCUUGuuAGcACCGc-CGGCGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 24535 0.68 0.535744
Target:  5'- cAGGAgGCGGUgGUGGCGGUgGCGGcGCc -3'
miRNA:   3'- -UUCU-UGUUAgCACCGCCGgCGUCcUG- -5'
18234 5' -56.1 NC_004680.1 + 7673 0.69 0.473014
Target:  5'- ----uCGAgCGUGGCGGCCuGCAGG-Cg -3'
miRNA:   3'- uucuuGUUaGCACCGCCGG-CGUCCuG- -5'
18234 5' -56.1 NC_004680.1 + 47212 0.69 0.462913
Target:  5'- -cGGGCGGUgGcucgGGCGGaaGCGGGACu -3'
miRNA:   3'- uuCUUGUUAgCa---CCGCCggCGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 21818 0.7 0.395617
Target:  5'- gGGGGAUGAgCGUGGCuguuGGCUGguGGGCu -3'
miRNA:   3'- -UUCUUGUUaGCACCG----CCGGCguCCUG- -5'
18234 5' -56.1 NC_004680.1 + 30133 0.72 0.318932
Target:  5'- uGGGAUAgcagGUUGUGGaCGcGCCGCAGGAa -3'
miRNA:   3'- uUCUUGU----UAGCACC-GC-CGGCGUCCUg -5'
18234 5' -56.1 NC_004680.1 + 30495 0.73 0.287886
Target:  5'- -cGAACAGUgCGggaugguuuuugaUGuGCGGCCGCAGGAa -3'
miRNA:   3'- uuCUUGUUA-GC-------------AC-CGCCGGCGUCCUg -5'
18234 5' -56.1 NC_004680.1 + 19363 0.73 0.281398
Target:  5'- --uGGCGGUgGUGGUGGUgCGCAGGGCu -3'
miRNA:   3'- uucUUGUUAgCACCGCCG-GCGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 16665 0.73 0.253961
Target:  5'- --cGGCGAUCcuccaGUuGCGGCCGCAGGGCg -3'
miRNA:   3'- uucUUGUUAG-----CAcCGCCGGCGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 26190 0.73 0.253304
Target:  5'- aGAGGACGGUggCGUuccagccGGCggGGCCGCGGGACu -3'
miRNA:   3'- -UUCUUGUUA--GCA-------CCG--CCGGCGUCCUG- -5'
18234 5' -56.1 NC_004680.1 + 53660 1.08 0.000907
Target:  5'- cAAGAACAAUCGUGGCGGCCGCAGGACg -3'
miRNA:   3'- -UUCUUGUUAGCACCGCCGGCGUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.