miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18236 3' -56.2 NC_004680.1 + 8400 0.66 0.73106
Target:  5'- uCGGaCGGCAgcuagccggugaaUCGUcCUGCcGGGugGGUu -3'
miRNA:   3'- -GCUaGCCGU-------------AGCA-GACGcUCCugCCG- -5'
18236 3' -56.2 NC_004680.1 + 12400 0.66 0.721733
Target:  5'- ---cCGGUGUCGUCUG-GuGcGugGGCg -3'
miRNA:   3'- gcuaGCCGUAGCAGACgCuC-CugCCG- -5'
18236 3' -56.2 NC_004680.1 + 17324 0.66 0.71129
Target:  5'- --uUCGGUGUgaaCGUCagGCGGGGuCGGUg -3'
miRNA:   3'- gcuAGCCGUA---GCAGa-CGCUCCuGCCG- -5'
18236 3' -56.2 NC_004680.1 + 45630 0.66 0.700772
Target:  5'- --cUCa--AUCGUCuugacgaaUGCGAGGGCGGCg -3'
miRNA:   3'- gcuAGccgUAGCAG--------ACGCUCCUGCCG- -5'
18236 3' -56.2 NC_004680.1 + 21918 0.66 0.69019
Target:  5'- aGAguUCGGCGUCacccUCacuccCGAGGugGGCa -3'
miRNA:   3'- gCU--AGCCGUAGc---AGac---GCUCCugCCG- -5'
18236 3' -56.2 NC_004680.1 + 15104 0.67 0.679556
Target:  5'- uGGUCGGUgucAUCGUCgaaaccGCGGGuuuGCGGUa -3'
miRNA:   3'- gCUAGCCG---UAGCAGa-----CGCUCc--UGCCG- -5'
18236 3' -56.2 NC_004680.1 + 25614 0.67 0.636687
Target:  5'- gGGUgGGCcgCGUg-GCGGGGuCGGUu -3'
miRNA:   3'- gCUAgCCGuaGCAgaCGCUCCuGCCG- -5'
18236 3' -56.2 NC_004680.1 + 11064 0.67 0.625935
Target:  5'- uCGAU-GGCAUCcugCUGCc-GGGCGGCc -3'
miRNA:   3'- -GCUAgCCGUAGca-GACGcuCCUGCCG- -5'
18236 3' -56.2 NC_004680.1 + 26234 0.69 0.520077
Target:  5'- ---gCGGCcuugGUCGUCagagacgGUGAGGACGGUu -3'
miRNA:   3'- gcuaGCCG----UAGCAGa------CGCUCCUGCCG- -5'
18236 3' -56.2 NC_004680.1 + 25714 0.7 0.489571
Target:  5'- gGGUgCGGCGUCGgCgacgGCGGGGAUgccgagGGCg -3'
miRNA:   3'- gCUA-GCCGUAGCaGa---CGCUCCUG------CCG- -5'
18236 3' -56.2 NC_004680.1 + 23688 0.73 0.320199
Target:  5'- -uGUCGGCGgaUCGUCUcaaccacauCGAGGACGGUa -3'
miRNA:   3'- gcUAGCCGU--AGCAGAc--------GCUCCUGCCG- -5'
18236 3' -56.2 NC_004680.1 + 54036 1.11 0.000834
Target:  5'- uCGAUCGGCAUCGUCUGCGAGGACGGCc -3'
miRNA:   3'- -GCUAGCCGUAGCAGACGCUCCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.