Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18237 | 3' | -56.5 | NC_004680.1 | + | 53369 | 0.67 | 0.647434 |
Target: 5'- cCCGACGUUucugUUCC-CGACGUUCcugGUCUCg -3' miRNA: 3'- -GGCUGCGG----GAGGuGUUGCAAG---CGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 10793 | 0.66 | 0.721733 |
Target: 5'- uUGAuCGCCUUCCACGcgGCGaacgCGCC-Ca -3' miRNA: 3'- gGCU-GCGGGAGGUGU--UGCaa--GCGGaG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 5697 | 0.66 | 0.720693 |
Target: 5'- cCCGAuggugccCGCCCgcagaCCAgCAGCG-UCGCCg- -3' miRNA: 3'- -GGCU-------GCGGGa----GGU-GUUGCaAGCGGag -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 28912 | 0.66 | 0.718609 |
Target: 5'- gCCGGCGUCCa--ACAgugccuuggugaucGCGaUCGCCUCc -3' miRNA: 3'- -GGCUGCGGGaggUGU--------------UGCaAGCGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 43512 | 0.66 | 0.71129 |
Target: 5'- aCGACGCcuCCUCCGCGACcuagUGCgUUg -3' miRNA: 3'- gGCUGCG--GGAGGUGUUGcaa-GCGgAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 15394 | 0.66 | 0.71129 |
Target: 5'- gCGACcauGUUCUCCACGACGguuugcagCGCC-Ca -3' miRNA: 3'- gGCUG---CGGGAGGUGUUGCaa------GCGGaG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 24934 | 0.66 | 0.700772 |
Target: 5'- -gGGCGCCC---GCAGCGUUguaguccccggCGCCUCc -3' miRNA: 3'- ggCUGCGGGaggUGUUGCAA-----------GCGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 16760 | 0.67 | 0.658167 |
Target: 5'- aCCGAuacCGCCCUgcggCCGCAACuGgaggaUCGCCg- -3' miRNA: 3'- -GGCU---GCGGGA----GGUGUUG-Ca----AGCGGag -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 24241 | 0.67 | 0.658167 |
Target: 5'- aCCGACucgucaGCCUUCgACAGCGaa-GCCUg -3' miRNA: 3'- -GGCUG------CGGGAGgUGUUGCaagCGGAg -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 5591 | 0.73 | 0.305139 |
Target: 5'- aCGAcaCGCCCccgUUCGgGACGUUCGCCUUc -3' miRNA: 3'- gGCU--GCGGG---AGGUgUUGCAAGCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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