Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18237 | 3' | -56.5 | NC_004680.1 | + | 54715 | 1.12 | 0.00057 |
Target: 5'- aCCGACGCCCUCCACAACGUUCGCCUCg -3' miRNA: 3'- -GGCUGCGGGAGGUGUUGCAAGCGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 11102 | 0.74 | 0.263238 |
Target: 5'- cCCGGCGCCCaagcagaacgCCGCGGcCGUUCGUCa- -3' miRNA: 3'- -GGCUGCGGGa---------GGUGUU-GCAAGCGGag -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 5591 | 0.73 | 0.305139 |
Target: 5'- aCGAcaCGCCCccgUUCGgGACGUUCGCCUUc -3' miRNA: 3'- gGCU--GCGGG---AGGUgUUGCAAGCGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 48401 | 0.72 | 0.368673 |
Target: 5'- uCCGuCGCCCaCCGCA----UCGCCUCa -3' miRNA: 3'- -GGCuGCGGGaGGUGUugcaAGCGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 38863 | 0.72 | 0.377226 |
Target: 5'- aCGACGCCaucgaCUCCACcaAGCaGUUCGCC-Cg -3' miRNA: 3'- gGCUGCGG-----GAGGUG--UUG-CAAGCGGaG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 40791 | 0.71 | 0.409102 |
Target: 5'- aCCGcaacauauuUGCCCgCCACGACGUgcgcagagccccgCGCCUCg -3' miRNA: 3'- -GGCu--------GCGGGaGGUGUUGCAa------------GCGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 25532 | 0.71 | 0.421944 |
Target: 5'- aCCGACcccgccacgcgGCCCacccCCACAaggagGCGUUCGCCa- -3' miRNA: 3'- -GGCUG-----------CGGGa---GGUGU-----UGCAAGCGGag -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 39942 | 0.71 | 0.421944 |
Target: 5'- gCGGCGCUCUCUGCGGCGcUC-CCUg -3' miRNA: 3'- gGCUGCGGGAGGUGUUGCaAGcGGAg -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 39906 | 0.71 | 0.421944 |
Target: 5'- gCGGCGCUCUCUGCGGCGcUC-CCUg -3' miRNA: 3'- gGCUGCGGGAGGUGUUGCaAGcGGAg -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 27865 | 0.7 | 0.469705 |
Target: 5'- gCUGACGCaagguCUCCACGGCGagUUCGCgaUCg -3' miRNA: 3'- -GGCUGCGg----GAGGUGUUGC--AAGCGg-AG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 23299 | 0.69 | 0.520077 |
Target: 5'- gCCGAccagaugcCGCCCUCCACAuagg-UGCCUg -3' miRNA: 3'- -GGCU--------GCGGGAGGUGUugcaaGCGGAg -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 10555 | 0.68 | 0.561839 |
Target: 5'- aCCGAacacCGCCC-CCAgGAaGUUCGCCcCg -3' miRNA: 3'- -GGCU----GCGGGaGGUgUUgCAAGCGGaG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 47906 | 0.68 | 0.572432 |
Target: 5'- gCCGGCGCUccaaCUCCGCGucACGggCauccucacgaGCCUCa -3' miRNA: 3'- -GGCUGCGG----GAGGUGU--UGCaaG----------CGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 52264 | 0.68 | 0.572432 |
Target: 5'- gCCGGCGCagCUCUGCGGCGaggGCUUCg -3' miRNA: 3'- -GGCUGCGg-GAGGUGUUGCaagCGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 28974 | 0.68 | 0.583071 |
Target: 5'- gCCGaACGCgCggcCCGC-ACGUUCGCC-Ca -3' miRNA: 3'- -GGC-UGCGgGa--GGUGuUGCAAGCGGaG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 53369 | 0.67 | 0.647434 |
Target: 5'- cCCGACGUUucugUUCC-CGACGUUCcugGUCUCg -3' miRNA: 3'- -GGCUGCGG----GAGGuGUUGCAAG---CGGAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 39798 | 0.67 | 0.647434 |
Target: 5'- gCGGCGCUCUCUGCGGCGcUCcaugcgGCgCUCc -3' miRNA: 3'- gGCUGCGGGAGGUGUUGCaAG------CG-GAG- -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 24241 | 0.67 | 0.658167 |
Target: 5'- aCCGACucgucaGCCUUCgACAGCGaa-GCCUg -3' miRNA: 3'- -GGCUG------CGGGAGgUGUUGCaagCGGAg -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 16760 | 0.67 | 0.658167 |
Target: 5'- aCCGAuacCGCCCUgcggCCGCAACuGgaggaUCGCCg- -3' miRNA: 3'- -GGCU---GCGGGA----GGUGUUG-Ca----AGCGGag -5' |
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18237 | 3' | -56.5 | NC_004680.1 | + | 55860 | 0.66 | 0.700772 |
Target: 5'- -aGACGCCCgCCGCGACaaccaUCGUCg- -3' miRNA: 3'- ggCUGCGGGaGGUGUUGca---AGCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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